| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is icd [H]
Identifier: 21244559
GI number: 21244559
Start: 4510204
End: 4512435
Strand: Reverse
Name: icd [H]
Synonym: XAC3835
Alternate gene names: 21244559
Gene position: 4512435-4510204 (Counterclockwise)
Preceding gene: 21244568
Following gene: 21244558
Centisome position: 87.19
GC content: 63.13
Gene sequence:
>2232_bases ATGTCGAAGACACCGAAGATCCTCTACACGCTCACCGACGAAGCACCCTACCTGGCCACGCAGTCGCTGCTACCGATCAT CGATGCCTACACCGATACCGCCGGCATCGTGGTCGAAACGCGCGATATCTCGCTGGCCGGGCGCATTCTTGCGCTGTTTC CCGAGCATTTGAGCGACACGCAGAAGATCGCCGACGACCTGGCCGAACTGGGCGAGCTGGCCACCACGCCGGAGGCCAAC ATCATCAAGCTGCCCAATATCAGCGCCTCGGTGCCGCAGCTCAAGGCCGCGATCAAGGAGCTGCAAGGCCAGGGCTACGC GTTGCCGGCGTATCCGGACGAGCCCAAGGATGCTGCGGAAAAAGACATCAAGGCGCGCTACGACAGGGTCAAGGGCAGCG CGGTGAATCCGGTGCTGCGCGAGGGCAATTCCGATCGTCGTGCACCGCTGTCGGTGAAGAATTACGCACGCAAGCACCCG CATCGCATGGGCAAGTGGAGCAGCGATTCCAAGTCGCACGTGTCGCACATGGAGTCCGGCGATTTCTTCGGTAGCGAGCA GTCCGCCACCATCGCCGACGCCGGCACGTTGAAGATCGAATTCGTCGGTGCCGATGGCAGCAGCACCGTGCTGAAAGACA AGGTCGCGGTCAAAGCCGGCGAAATCGTCGATGCTGCCGTATTGAGCAAGCGCGCGCTGGCCAGCTTCATCGACGCGCAG ATCGCCGATGCCAAGGCCCGCGACGTGCTGTTCTCGGTGCATCTGAAAGCCACCATGATGAAGGTCTCCGATCCGGTGCT GTTCGGCGTGGTGGTCGGCGAGTTCTACAAGGACACGCTGAGCAAGCATGCCGATGCGCTCAAGTCGGTCGGTTTCGATC CCAACAACGGCATCGGCGATCTGTACGCACGCATCGGCACGTTGCCGGAAGAGCAGCAGGCACAGATCACCGCCGATATC CAGGCCGAATACGCGCAGCGTCCGGGCCTGGCGATGGTCAATTCGGACAAGGGCATCACCAACCTGCATGTGCCCAGCGA CGTGATCGTCGATGCTTCCATGCCGGCGATGATTCGCGACTCCGGCCAGATGTGGAACGCGCAAGGCAAGTTGCAGGACA CCAAGGCGGTGATTCCGGATCGTTGCTACGCGGACGTATATCAGGCGGTAATCGACGACTGCAAGGCGCACGGCGCGTTC GATCCGTCCACGATGGGCTCGGTGCCCAACGTGGGGCTGATGGCGCAGAAGGCCGAAGAATATGGCTCGCACGACAAGAC CTTCCAGATGTCCGGCGCCGGCACCGTCAAGGTCACCGATGGCAACGGCAAGACGGTGTTCGAGCACGCAGTGGAAGCCG GCGATCTGTGGCGCATGTGCCAGGTCAAGGACGCGCCGATCCAGGATTGGGTGAAGCTGGCCGTGGAGCGCGCCCGCCTG AGCGAGACGCCGGCCGTGTTCTGGCTGGACAAGGCGCGCGCACACGATGCGCAGGTGATCGCCAAGGTCGAGCAGTATCT CAAGGATCACGACACCAACGGCCTGGATATCCGCATCCTGCCGCCGGTGGAAGCGACGACCTTCTCGCTGGAGCGCATCC GCAAGGGTCAGGACACCATCTCGGTCACCGGCAACGTGCTGCGCGACTACCTCACCGACCTGTTCCCGATCATGGAGCTC GGTACCAGTGCCAAGATGCTGTCCATCGTGCCGCTGATGGCCGGCGGCGGCCTGTTCGAAACCGGTGCCGGTGGTTCGGC GCCCAAACATGTGCAGCAGTTCGTCGAAGAGAACTGCCTGCGCTGGGATTCGCTGGGGGAATTCCTGGCCCTGGCCGCGT CGCTCGAGCACCTGGGCAACCGTTACGACAACCCATCGGCCACCGTGCTGGCCAAGGCGCTGGATGTCGCCAACGGCCAG TTCCTGGACAACAACAAGTCGCCGGCGCGCAAGGTCGGCGAGCTCGATAACCGCGGCAGCCACTTCTATCTGGCGATGTA CTGGGCGCAGGCCCTGGCTGCGCAGACCGAAGACATGGCTTTGCAGGCCAAGTTCGCGCCGCTGGCCAAGGCCCTGACCG GGAACGAAGCCACGATCGTGGCCGAGCTCAACGGCGCGCAGGGCAAGCCGGTGGAGATTGGCGGTTACTACCATCCCGAC TTGGCCAAGGTCAGCGAGTCGATGCGCCCCAGCAAGACCTTCAACGACATCCTGGCCACGCTCAAGGCCTGA
Upstream 100 bases:
>100_bases CCGGGGGCGTTCTCCCCGATGCCGCCCGCGATCCAGTCGGCGACGTACCCTTCCGTATAGTCGCCACTGTCTCCTTTCCT CCGAGGTCCTATCCCGCGCC
Downstream 100 bases:
>100_bases GTCGCCGCGCCGCCTGCTGTCTCCGCATGTCGTCTGCAAGGCCCGCCTCGGAAGAGACGGGCCTTGTCGTTTCAGCGAAA CGGCGACAATGCCGTCACGC
Product: isocitrate dehydrogenase
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 743; Mature: 742
Protein sequence:
>743_residues MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDTQKIADDLAELGELATTPEAN IIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHP HRMGKWSSDSKSHVSHMESGDFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARIGTLPEEQQAQITADI QAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAF DPSTMGSVPNVGLMAQKAEEYGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL SETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQ FLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPD LAKVSESMRPSKTFNDILATLKA
Sequences:
>Translated_743_residues MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDTQKIADDLAELGELATTPEAN IIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHP HRMGKWSSDSKSHVSHMESGDFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARIGTLPEEQQAQITADI QAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAF DPSTMGSVPNVGLMAQKAEEYGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL SETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQ FLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPD LAKVSESMRPSKTFNDILATLKA >Mature_742_residues SKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDTQKIADDLAELGELATTPEANI IKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHPH RMGKWSSDSKSHVSHMESGDFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQI ADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARIGTLPEEQQAQITADIQ AEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAFD PSTMGSVPNVGLMAQKAEEYGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARLS ETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQF LDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPDL AKVSESMRPSKTFNDILATLKA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80298; Mature: 80167
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDT CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCHHHHHH QKIADDLAELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAE HHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHH KDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCHHCCCCCCCCHHHHHHCCCC DFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ CCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGD HHCCHHHHHEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARIGTLPEEQQAQITADIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRD HHHHHCCCCCCHHHHEEHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEECCCCCHHHHC SGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAFDPSTMGSVPNVGLMAQKAEE CCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL HCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTI CCCCEEEEEECHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH RWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGS CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHCCCCCCC HFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPD EEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCEECCC LAKVSESMRPSKTFNDILATLKA HHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure SKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDT CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCHHHHHH QKIADDLAELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAE HHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHH KDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCHHCCCCCCCCHHHHHHCCCC DFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQ CCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGD HHCCHHHHHEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARIGTLPEEQQAQITADIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRD HHHHHCCCCCCHHHHEEHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEECCCCCHHHHC SGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAFDPSTMGSVPNVGLMAQKAEE CCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH YGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARL HCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH SETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTI CCCCEEEEEECHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH RWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGS CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHCCCCCCC HFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPD EEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCEECCC LAKVSESMRPSKTFNDILATLKA HHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]