| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yicG [C]
Identifier: 21244547
GI number: 21244547
Start: 4497320
End: 4497934
Strand: Direct
Name: yicG [C]
Synonym: XAC3823
Alternate gene names: 21244547
Gene position: 4497320-4497934 (Clockwise)
Preceding gene: 21244546
Following gene: 21244554
Centisome position: 86.9
GC content: 70.24
Gene sequence:
>615_bases GTGGCAACTGTCCTGTTCCTGCTGGATCTGCTCGGCACCTTCGTGTTCGCCCTGAGCGGGGCGACCGTGGCGGTACGCAA CCGTCTGGACCTGTTCGGCGTGCTGGTGCTCTCCTGCGCGGCCGCCGTGTCCGGCGGCATCGTGCGCGATGTGCTGATCG GCGCCACCCCGCCGGCCGCGCTGGTGCAGCCGCAGTATCTGCTGGTGGCCTGCCTGGCCGGCGTGGCCGGGTTCTATTGC CATGCAGCGGTGGAGCGCCTGCGCAATCCGGTGCAGATCTTCGATGCCGCCGGGCTGGCGCTGTTTGCGGTCTATGGCAC CAGCAAGGCGCTGGACTATCACCTCACCCCGTTGAGCGCGACATTGCTGGGCATGCTCAGCGGCATCGGCGGCGGCATTG CGCGCGATCTGCTGGTGGCGCGCACGCCGGTGGTGTTGCAGGCCGAACTGTACGCGGTCGCCGCGCTTGCCGGTGGCGGG CTGGTCGCGGTCGGGCACGTCCTGGATGTGCCGCAGGCCTGGTCGTTGGCGACCGGCGCCGGCGTGTGCTTCGGCCTGCG CTTCATGGCGATCCGCTACGGCTGGCATCTGCCGGTGGCGCGCTCGCCGGAGTAG
Upstream 100 bases:
>100_bases TTCGGCGGCGCCACCGACGATCCTCCCCCCAGCAGCAAGGACGGATGACAGCGGCGCAAGCCGTGCGCGATGCTGTGCGG CCTGATGCGATGGCCTGACC
Downstream 100 bases:
>100_bases CAATCGCGTAGCCCCACATAGGCAGACGGCCCGGAAAACCGGGCCGTCTGTGCAAACACCCGCGCAAGACCGACAGGATC AGGCGACGAACAGCGCCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MATVLFLLDLLGTFVFALSGATVAVRNRLDLFGVLVLSCAAAVSGGIVRDVLIGATPPAALVQPQYLLVACLAGVAGFYC HAAVERLRNPVQIFDAAGLALFAVYGTSKALDYHLTPLSATLLGMLSGIGGGIARDLLVARTPVVLQAELYAVAALAGGG LVAVGHVLDVPQAWSLATGAGVCFGLRFMAIRYGWHLPVARSPE
Sequences:
>Translated_204_residues MATVLFLLDLLGTFVFALSGATVAVRNRLDLFGVLVLSCAAAVSGGIVRDVLIGATPPAALVQPQYLLVACLAGVAGFYC HAAVERLRNPVQIFDAAGLALFAVYGTSKALDYHLTPLSATLLGMLSGIGGGIARDLLVARTPVVLQAELYAVAALAGGG LVAVGHVLDVPQAWSLATGAGVCFGLRFMAIRYGWHLPVARSPE >Mature_203_residues ATVLFLLDLLGTFVFALSGATVAVRNRLDLFGVLVLSCAAAVSGGIVRDVLIGATPPAALVQPQYLLVACLAGVAGFYCH AAVERLRNPVQIFDAAGLALFAVYGTSKALDYHLTPLSATLLGMLSGIGGGIARDLLVARTPVVLQAELYAVAALAGGGL VAVGHVLDVPQAWSLATGAGVCFGLRFMAIRYGWHLPVARSPE
Specific function: Unknown
COG id: COG2860
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0126 family [H]
Homologues:
Organism=Escherichia coli, GI87082304, Length=148, Percent_Identity=36.4864864864865, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1786352, Length=195, Percent_Identity=36.9230769230769, Blast_Score=90, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005115 [H]
Pfam domain/function: PF03458 UPF0126 [H]
EC number: NA
Molecular weight: Translated: 21015; Mature: 20884
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVLFLLDLLGTFVFALSGATVAVRNRLDLFGVLVLSCAAAVSGGIVRDVLIGATPPAA CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH LVQPQYLLVACLAGVAGFYCHAAVERLRNPVQIFDAAGLALFAVYGTSKALDYHLTPLSA HHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHH TLLGMLSGIGGGIARDLLVARTPVVLQAELYAVAALAGGGLVAVGHVLDVPQAWSLATGA HHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEHHHHHCCCCHHHHHCHH GVCFGLRFMAIRYGWHLPVARSPE HHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ATVLFLLDLLGTFVFALSGATVAVRNRLDLFGVLVLSCAAAVSGGIVRDVLIGATPPAA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH LVQPQYLLVACLAGVAGFYCHAAVERLRNPVQIFDAAGLALFAVYGTSKALDYHLTPLSA HHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHH TLLGMLSGIGGGIARDLLVARTPVVLQAELYAVAALAGGGLVAVGHVLDVPQAWSLATGA HHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEHHHHHCCCCHHHHHCHH GVCFGLRFMAIRYGWHLPVARSPE HHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]