| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is arnT2 [H]
Identifier: 21244522
GI number: 21244522
Start: 4467603
End: 4469324
Strand: Reverse
Name: arnT2 [H]
Synonym: XAC3798
Alternate gene names: 21244522
Gene position: 4469324-4467603 (Counterclockwise)
Preceding gene: 21244523
Following gene: 21244521
Centisome position: 86.35
GC content: 67.19
Gene sequence:
>1722_bases ATGTTCAAGAATCGCGCTTCCACCGATGTCTGGTTGCTGGCCATGACCGCCGTGCTGGTGATCGGTGCCGGCCTGGGTTT GCGTGACCCGTGGCCGGCGGACGAGCCGCGCTTTGCGCTGGTGGCCAAGCAGATGGTGTTGAGCGGCGACTGGTTGTTCC CGCATCGCGGCAACGAGCTGTATTCGGACAAGCCACCGATGCTGATGTGGCTGCAGGCGCTGTCCTACACGTTGCTGGGC AATTGGCGGGTGGCGTTCCTGCTGCCGTCGTTGCTGGCCGCGTTGGGCACATTGGCCTGCGTCTACGATCTGGGCCGGCG CATGTGGACCCGGCGCGTCGGTCTCTATGCGGCCTGGATGCTGCTGTTTACGCTGCACTTCACCTTCCAGGCCAAGAAGG CGCAGATCGACCCGCTGGTGGTGTTCTGGATCACCTTGGCCAATTACGGATTGCTGCGCCATCTGCTGATGGGCCCGGCC TGGCGCTGGTGGACGCTGGGCTGGTTTTCCGCCGGCTTGGGCGTGATCACCAAGGGTGTGGGCATCATCGCGCTGCTGAT GCTGATCCCGGCCGGGATTGCCGCGGCGCGTGGTTGGGCGGGTGTGCGCGTGCATGTGCGCGACCGGCGCTTCTGGTTGG GGCCGCTGTTCTTCTTCGTGGCGATCCTGTTGTGGTTCGTGCCGATGATGGTGACGGCGCTGACCGCCGGCCAGCCCGAA TACCGCGTGTATCTCAACGACATCCTGCTGCGCCAGACCGCCAAGCGCTACGCCAGCTCCTGGGATCACGCGCAGCCGGT CTGGTACCACCTGCAAAGCATGGCCACGATGTGGCTGCCGACCATCCTGCTGCTGCCGTGGGCGATCCCGGCGTGGCGGC GCCGGCTCAAGCGGCGCGACCCGCGCTATCTGCTGCCGCTGGCCTGGTGGCTGCTGGTGCTGGTGTTCTTCACCATTCCC AGCGGCAAGCGCGATGTCTACATCCTGCCGGCCCTGCCGATGTTCTGCCTGGCACTGGCGCCGCTGGTGCCAGGCCTGCT GCGCCGTGCTGGCGCGCAGCGGCTGCTGTTCGGGTTCGGGGTGCTGCTGGCGCTGGTGTTCAGCGCCGGTGGCACGGCGA TGCTGATCGGCCATCCGGGCTTCGAGCAGAAGATCATGGACAGCCGCGGGGTCGGCAGCGAAGCCACCGACCCATTGGGC TGGCTGCTGCTGGCGGTCGGTACCTGGGGCGTTGCCAGCCTGCTGCTGACGCGGGTGCGCCGCTCCGCATTCGCGGTGGT CTCGCTGCTTGGTGCATGGTGGGTGGCCTTCGGGCTGGTCTGCTACCCGATCTTCAACGATTCCAGTTCGGCCGGCGCGG TGATGCGCGAGGCCGGGCGCCGCATCGGCCCGGATGCGCAACTCGGGCTCGTGGCATGGAAGGAGCAGAACCTGCTGATG GCCGACCGCCCGGCGCAGACCTTCGGCTTCAAGGTGCCGTGGGAAACCCAATTGCAGCGCGGCGTGGCCTGGCAGGCACA GCAACCCCGCCAGCGCTGGCTGATGGCGCAGGAAACCGCGTTGCTGGCCTGCGTGGATCGCAGTCGCAGCCAGCTGGTGG GCGTGGCCAATCGCCGACGCTGGTGGCTGGTGCCGGGCGATGCGGTGCATGGCGACTGCGTGGCCAGCTCCAGCGAGCGC GCGGTGGAAGCAAAAGAACAGGGCAACCTGGATACCGAATGA
Upstream 100 bases:
>100_bases AGCAGCACTGCGACGGATTTTTCTACGCGCTTTTGCTAAAAGCCTCCTGATCGCGCGCGAAGTCCAGCGCTCCACCCTCT GCGACCGACTGCCGCCCGAC
Downstream 100 bases:
>100_bases GCCAGCGCAACCCACAGGCATGCGCACGTGCCGGGCGCCCTTTGTACGGCGTCAATGCGCCAGATGGCGGCCGTCTAGCA GGGATTCATGCGGCGCATCG
Product: hypothetical protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase 2; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase 2 [H]
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALSYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRMWTRRVGLYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPA WRWWTLGWFSAGLGVITKGVGIIALLMLIPAGIAAARGWAGVRVHVRDRRFWLGPLFFFVAILLWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLPLAWWLLVLVFFTIP SGKRDVYILPALPMFCLALAPLVPGLLRRAGAQRLLFGFGVLLALVFSAGGTAMLIGHPGFEQKIMDSRGVGSEATDPLG WLLLAVGTWGVASLLLTRVRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWETQLQRGVAWQAQQPRQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPGDAVHGDCVASSSER AVEAKEQGNLDTE
Sequences:
>Translated_573_residues MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALSYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRMWTRRVGLYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPA WRWWTLGWFSAGLGVITKGVGIIALLMLIPAGIAAARGWAGVRVHVRDRRFWLGPLFFFVAILLWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLPLAWWLLVLVFFTIP SGKRDVYILPALPMFCLALAPLVPGLLRRAGAQRLLFGFGVLLALVFSAGGTAMLIGHPGFEQKIMDSRGVGSEATDPLG WLLLAVGTWGVASLLLTRVRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWETQLQRGVAWQAQQPRQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPGDAVHGDCVASSSER AVEAKEQGNLDTE >Mature_573_residues MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNELYSDKPPMLMWLQALSYTLLG NWRVAFLLPSLLAALGTLACVYDLGRRMWTRRVGLYAAWMLLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPA WRWWTLGWFSAGLGVITKGVGIIALLMLIPAGIAAARGWAGVRVHVRDRRFWLGPLFFFVAILLWFVPMMVTALTAGQPE YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRDPRYLLPLAWWLLVLVFFTIP SGKRDVYILPALPMFCLALAPLVPGLLRRAGAQRLLFGFGVLLALVFSAGGTAMLIGHPGFEQKIMDSRGVGSEATDPLG WLLLAVGTWGVASLLLTRVRRSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM ADRPAQTFGFKVPWETQLQRGVAWQAQQPRQRWLMAQETALLACVDRSRSQLVGVANRRRWWLVPGDAVHGDCVASSSER AVEAKEQGNLDTE
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=357, Percent_Identity=25.7703081232493, Blast_Score=79, Evalue=9e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 64410; Mature: 64410
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNEL CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC YSDKPPMLMWLQALSYTLLGNWRVAFLLPSLLAALGTLACVYDLGRRMWTRRVGLYAAWM CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPAWRWWTLGWFSAGLGVITKGV HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH GIIALLMLIPAGIAAARGWAGVRVHVRDRRFWLGPLFFFVAILLWFVPMMVTALTAGQPE HHHHHHHHHHCHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC PRYLLPLAWWLLVLVFFTIPSGKRDVYILPALPMFCLALAPLVPGLLRRAGAQRLLFGFG CCEEHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLLALVFSAGGTAMLIGHPGFEQKIMDSRGVGSEATDPLGWLLLAVGTWGVASLLLTRVR HHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCEEE ADRPAQTFGFKVPWETQLQRGVAWQAQQPRQRWLMAQETALLACVDRSRSQLVGVANRRR ECCCHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE WWLVPGDAVHGDCVASSSERAVEAKEQGNLDTE EEEECCCCCCCCHHCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MFKNRASTDVWLLAMTAVLVIGAGLGLRDPWPADEPRFALVAKQMVLSGDWLFPHRGNEL CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC YSDKPPMLMWLQALSYTLLGNWRVAFLLPSLLAALGTLACVYDLGRRMWTRRVGLYAAWM CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFTLHFTFQAKKAQIDPLVVFWITLANYGLLRHLLMGPAWRWWTLGWFSAGLGVITKGV HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH GIIALLMLIPAGIAAARGWAGVRVHVRDRRFWLGPLFFFVAILLWFVPMMVTALTAGQPE HHHHHHHHHHCHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YRVYLNDILLRQTAKRYASSWDHAQPVWYHLQSMATMWLPTILLLPWAIPAWRRRLKRRD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC PRYLLPLAWWLLVLVFFTIPSGKRDVYILPALPMFCLALAPLVPGLLRRAGAQRLLFGFG CCEEHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLLALVFSAGGTAMLIGHPGFEQKIMDSRGVGSEATDPLGWLLLAVGTWGVASLLLTRVR HHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RSAFAVVSLLGAWWVAFGLVCYPIFNDSSSAGAVMREAGRRIGPDAQLGLVAWKEQNLLM HHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCEEE ADRPAQTFGFKVPWETQLQRGVAWQAQQPRQRWLMAQETALLACVDRSRSQLVGVANRRR ECCCHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE WWLVPGDAVHGDCVASSSERAVEAKEQGNLDTE EEEECCCCCCCCHHCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA