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The map label for this gene is atpH

Identifier: 21244377

GI number: 21244377

Start: 4331775

End: 4332302

Strand: Reverse

Name: atpH

Synonym: XAC3652

Alternate gene names: 21244377

Gene position: 4332302-4331775 (Counterclockwise)

Preceding gene: 21244378

Following gene: 21244376

Centisome position: 83.71

GC content: 67.8

Gene sequence:

>528_bases
ATGAGTCAGGCCCTCACCCTTGCCCGTCCCTACGGCCGTGCCGCGTTTGCGATCGCGCGTGAGGGCGGCAACTTCGCGCC
CTGGTCCGATGCGCTGGCGTTTTCGGCGCAGGTGGCCGGCGATCCGCGCGTGGCCGCATTGCTGCTCAACCCGGCCCTGG
GCCAGGAACAGGCAGTGACGCTGCTGGCCCCGCCGCAGGCGGGCGAGGACTATCTGCGTTTCCTCGGCGTGCTGGCCGAT
GCGCAGCGGCTGTCGCTGCTGCCGGAAGTTGCAGGCTTGTACGAACACCTGCGTGCCGAGGCCGAACATGTCGTCAAGGC
GACGGTGACCTCGGCCGCTGCAATGAGCCAGACCGAACTCGACACGATCGCTGCTGCGCTGAAGAAGCGCTTTGGCCGCG
ACGTGGACATCACCACCGCAGTCGATGCGTCGCTGATCGGCGGCGCGGTGATCGACACCGGCGACGTGGTCATCGACGGC
TCGCTGAAGGGCAAGCTTGCGCGTCTGCAAAGCTCGCTCGCCCACTGA

Upstream 100 bases:

>100_bases
GGTGCTGGCCGTCAGCGGTGCAGAAAAGCTGCTCAAGCGCGAAATCGATGCCAACGCCCACAAGGCGCTGCTCGACGAGC
TGGCGGCGGAGATTTAAGCG

Downstream 100 bases:

>100_bases
ATTCACATAAACGCATGGCCCTCGCGGCCGGCACCTAGGACTGAACGATGGCAACCACGCTCAACCCCTCCGAAATCAGC
GACCTGATCAAGACCCGCAT

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSQALTLARPYGRAAFAIAREGGNFAPWSDALAFSAQVAGDPRVAALLLNPALGQEQAVTLLAPPQAGEDYLRFLGVLAD
AQRLSLLPEVAGLYEHLRAEAEHVVKATVTSAAAMSQTELDTIAAALKKRFGRDVDITTAVDASLIGGAVIDTGDVVIDG
SLKGKLARLQSSLAH

Sequences:

>Translated_175_residues
MSQALTLARPYGRAAFAIAREGGNFAPWSDALAFSAQVAGDPRVAALLLNPALGQEQAVTLLAPPQAGEDYLRFLGVLAD
AQRLSLLPEVAGLYEHLRAEAEHVVKATVTSAAAMSQTELDTIAAALKKRFGRDVDITTAVDASLIGGAVIDTGDVVIDG
SLKGKLARLQSSLAH
>Mature_174_residues
SQALTLARPYGRAAFAIAREGGNFAPWSDALAFSAQVAGDPRVAALLLNPALGQEQAVTLLAPPQAGEDYLRFLGVLADA
QRLSLLPEVAGLYEHLRAEAEHVVKATVTSAAAMSQTELDTIAAALKKRFGRDVDITTAVDASLIGGAVIDTGDVVIDGS
LKGKLARLQSSLAH

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=172, Percent_Identity=39.5348837209302, Blast_Score=121, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_XANAC (Q8PGG4)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_643959.1
- ProteinModelPortal:   Q8PGG4
- SMR:   Q8PGG4
- GeneID:   1157723
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC3652
- NMPDR:   fig|190486.1.peg.3603
- HOGENOM:   HBG668108
- OMA:   ASLERKF
- ProtClustDB:   PRK05758
- BioCyc:   XAXO190486:XAC3652-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 18218; Mature: 18087

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQALTLARPYGRAAFAIAREGGNFAPWSDALAFSAQVAGDPRVAALLLNPALGQEQAVT
CCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEE
LLAPPQAGEDYLRFLGVLADAQRLSLLPEVAGLYEHLRAEAEHVVKATVTSAAAMSQTEL
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTIAAALKKRFGRDVDITTAVDASLIGGAVIDTGDVVIDGSLKGKLARLQSSLAH
HHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SQALTLARPYGRAAFAIAREGGNFAPWSDALAFSAQVAGDPRVAALLLNPALGQEQAVT
CCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEE
LLAPPQAGEDYLRFLGVLADAQRLSLLPEVAGLYEHLRAEAEHVVKATVTSAAAMSQTEL
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTIAAALKKRFGRDVDITTAVDASLIGGAVIDTGDVVIDGSLKGKLARLQSSLAH
HHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12024217