| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is btuB [H]
Identifier: 21244338
GI number: 21244338
Start: 4286133
End: 4288805
Strand: Reverse
Name: btuB [H]
Synonym: XAC3613
Alternate gene names: 21244338
Gene position: 4288805-4286133 (Counterclockwise)
Preceding gene: 21244341
Following gene: 21244337
Centisome position: 82.87
GC content: 64.83
Gene sequence:
>2673_bases ATGGCCCACTGCACGGCCCCCTGTTCATGGATGCCGTGCGTGAAGCGCCCTATGCCTTATCTGCTGTCTCTTGCCGTGTT GTCGGTGCTGATCCCGCTTGCACATGCCGACGAGGCAACACCCGCCACCGGCAAGACCCTGGCTACCGTCAGCGTCACCG GTTCCAACATCAAGCGCAGCGACAGCGAAGGCCCAAACCCGGTGCAGGTGATCGACCGCCAGCAACTGGAGCAGTCCGGC AAGGTCACCGTGGCCGACGCGCTGCGTTCCATCTCGGCCAACACCGGCAACGCCACCAATGAAACCACCAACAACGGCTG GGCGTCCGGCTCGGCGGGCATCGGCCTGCGCGGACTGTCGCAGAAGAACACGCTGGTCCTGCTCAACGGTCGCCGCCTGG CCAATTACGGCTTTCCCGCCAATGGCCTGGGCGACACCTTCGTCAATCTCAACGCGCTGCCGCTGGTGGCAGTGGAGCGC ATCGAAGTGCTCAAGGATGGCGCCTCGGCGGTGTACGGCTCCGACGCGGTGGCTGGCGTGGTCAATATCATCACCCGGCA GGATTTTCAGGGCGCCGAACTGGGCCTCAGCGGCGGTACCTCCGATCAGGGCGGCATGGACACGCAGCGTGCCAAATTCG TCGGCGGGATCGGCGATCTGGACAGCGACGGTTACAACATCCTTTTCAGCTTCGACGCCTACAACCGCGACCGTCTCGAT CAGGACCAGCGCGCACTGACCCGCTCGGGCATCTATAGCGATCTGCCGGGCGGGCGCTGGAATGGCTGGTCGGCCAAGGG CGCACGTTACCTGGTCGGCGGCCGCTCGGTGCCGATGCTCGATGCGCAGGGCAACTGCCCCGCCGGCACGGTGCTGACCG CCAGCGCGCCGATCGACGGGCTGGCCGGCGACACCTGCGGCTTCAACCAGGCGCCGTTCACCACGTTGATTCCCTCTACC AAGCGCTATCAGGCCTACACCAACGCCACCTTCCGGCTCAGCGATTCTGTCGAAGCGTTCGGCGAGGCGCTCTACAGCGA GGTCAAGGGCGTGTCGATCTTCGGCTCCAGCCCGTACTTCACCTTGGAAGGCGGCCGCTTTGCGTTGAACGCCAGCACTG GTCTGGCCGAGCCGGTCTCCAACCTGCTGCCGGCTTCCAGCCCCTACAACCCGTACGGCACGGCGGTGCCGATCGAATAC ACCTTCTTCGACCTGGGCCAGACGGTCAAAACCAATCGCTCGCAGTCCTACCGCTTTCTCGGTGGCGTGCGCGGCACCAC CGAACGCTGGGACTGGGAGGCGGCGGCGTTCGCCGCACGCAGCACCGAGCACGAAACCGTGTCCGGCGGTTTTGCCAATC GCTTCACCTTGGCGCAGGCGTTGGCCGACGGCAGTTACAACCTGCTTGATCCAGCGGCGACACCGCAGGCGGTGATCGAT GGCATCAACCTCAGCACCTTGCGGCCTGCGCAATCGACCTTGCGCGGTGTCGATGCCAAGGTGTCGGGCAATCTGTTCGA GCTGCCGGCCGGTAGCGTCGGATTCGCCGCCGGTGCCGAGTGGCGGCAGGAAGAACTGGTGTCGCGTAATCCGCTGCAGA TCGATCAAGGCCTGCAGATCCGCCCGGCAATTGCTGCGGTGGACGGCGAGCGCAAGGTGTCTGCGCTGTATGCCGAAGTC AACGTACCGCTGCTGCCATCGCTGGAGCTGCAACTGGCCGGGCGTGGCGATCACTACAGCGATTTCGGCGATGCATTTTC GCCCAAGGCCAGCTTGCGCTGGCAACCGCTCGATGCGGTGCTGGTGCGCGCGGCGGCCTCGCGCGGTTTTCGTGCGCCGT CGCTGTCGGAGAATGCGGCCAGCACCAATATTTCCTACGGCTCGGTGGTGGATCCCTACGATCCGGATGTGCCGGGCTCG CGCCAGAACCCGACTTTTTTCACTGTCGGCAACACCGCGCTCGACCCCGAGCGCACCCGCAGCTACAACCTGGGGGTGGT GTTGTCGCCGTGGGCGGAGACCAGCCTGAGCGTGGACTGGTACAAGATCGAACTGGACAACCTGGTCGGCACCGGCAACA ACGCCACCATCGTGCAGAACAATAATCCGGCCGATGTCGTGCGCAACGAGCGCGGCACCCTGGTGGCGGTGTACAACCGC TATCAGAATCTCAGCGAGCTCAGCACCTCCGGAATCGATGTCGAACTGCGCCAGCGTTGGCGCACCGAGGCGGCCGGCAA CTTCGGGCTCAACACGGCTTACACGCATGTCCGCGATTACCGTCGGCCCACCGTGGTCGGTGGCCCGCTGCAGGATTACG CCGGCAGCAATCTCGGCCCGTCGCTGCCCCGCAACAAGGCCACCACCACGCTGGACTGGAATCTGGGCACCATCAGTGCC GCGTTGACCTGGTACTACACCGGCGGCTACGACCAGAAGGCCAGCGCGGCAGCGAGTGCCGTGCAGTCGCGCGTGGGCGA CTACAACCAGTTCGATCTGTATCTGGGCTACACCGGCATCGACGCGCTCACGCTGTACGCCAAGATCGAAAATCTGGCCG ACAAGCAGCCGCCGGTCGATGCGTCGTTCCCCGGGATTCGCGCGCCTTACGACTTCACCCAATACGACTTGCGCGGCCGC TATTTCACGGTGGGGGTGGATTACCGGTTCTGA
Upstream 100 bases:
>100_bases GGGCCAGGTCCGATGCGCTGGCAACGTCCTGGTGTGTCAGCGTGTGTCACCGTGACGCATATCTGTATGCAGATATGTAA TTTTTGTTAGTAAAGCGTAC
Downstream 100 bases:
>100_bases TTCGCGCACGCAGCGCCGATGCGCGTGGTGGAGAGTTGCCACTAACACCGCCATCGCGCCACCGCCCGCTGCACCGTCAG GTTCGCGACCTCGTTCGTGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 890; Mature: 889
Protein sequence:
>890_residues MAHCTAPCSWMPCVKRPMPYLLSLAVLSVLIPLAHADEATPATGKTLATVSVTGSNIKRSDSEGPNPVQVIDRQQLEQSG KVTVADALRSISANTGNATNETTNNGWASGSAGIGLRGLSQKNTLVLLNGRRLANYGFPANGLGDTFVNLNALPLVAVER IEVLKDGASAVYGSDAVAGVVNIITRQDFQGAELGLSGGTSDQGGMDTQRAKFVGGIGDLDSDGYNILFSFDAYNRDRLD QDQRALTRSGIYSDLPGGRWNGWSAKGARYLVGGRSVPMLDAQGNCPAGTVLTASAPIDGLAGDTCGFNQAPFTTLIPST KRYQAYTNATFRLSDSVEAFGEALYSEVKGVSIFGSSPYFTLEGGRFALNASTGLAEPVSNLLPASSPYNPYGTAVPIEY TFFDLGQTVKTNRSQSYRFLGGVRGTTERWDWEAAAFAARSTEHETVSGGFANRFTLAQALADGSYNLLDPAATPQAVID GINLSTLRPAQSTLRGVDAKVSGNLFELPAGSVGFAAGAEWRQEELVSRNPLQIDQGLQIRPAIAAVDGERKVSALYAEV NVPLLPSLELQLAGRGDHYSDFGDAFSPKASLRWQPLDAVLVRAAASRGFRAPSLSENAASTNISYGSVVDPYDPDVPGS RQNPTFFTVGNTALDPERTRSYNLGVVLSPWAETSLSVDWYKIELDNLVGTGNNATIVQNNNPADVVRNERGTLVAVYNR YQNLSELSTSGIDVELRQRWRTEAAGNFGLNTAYTHVRDYRRPTVVGGPLQDYAGSNLGPSLPRNKATTTLDWNLGTISA ALTWYYTGGYDQKASAAASAVQSRVGDYNQFDLYLGYTGIDALTLYAKIENLADKQPPVDASFPGIRAPYDFTQYDLRGR YFTVGVDYRF
Sequences:
>Translated_890_residues MAHCTAPCSWMPCVKRPMPYLLSLAVLSVLIPLAHADEATPATGKTLATVSVTGSNIKRSDSEGPNPVQVIDRQQLEQSG KVTVADALRSISANTGNATNETTNNGWASGSAGIGLRGLSQKNTLVLLNGRRLANYGFPANGLGDTFVNLNALPLVAVER IEVLKDGASAVYGSDAVAGVVNIITRQDFQGAELGLSGGTSDQGGMDTQRAKFVGGIGDLDSDGYNILFSFDAYNRDRLD QDQRALTRSGIYSDLPGGRWNGWSAKGARYLVGGRSVPMLDAQGNCPAGTVLTASAPIDGLAGDTCGFNQAPFTTLIPST KRYQAYTNATFRLSDSVEAFGEALYSEVKGVSIFGSSPYFTLEGGRFALNASTGLAEPVSNLLPASSPYNPYGTAVPIEY TFFDLGQTVKTNRSQSYRFLGGVRGTTERWDWEAAAFAARSTEHETVSGGFANRFTLAQALADGSYNLLDPAATPQAVID GINLSTLRPAQSTLRGVDAKVSGNLFELPAGSVGFAAGAEWRQEELVSRNPLQIDQGLQIRPAIAAVDGERKVSALYAEV NVPLLPSLELQLAGRGDHYSDFGDAFSPKASLRWQPLDAVLVRAAASRGFRAPSLSENAASTNISYGSVVDPYDPDVPGS RQNPTFFTVGNTALDPERTRSYNLGVVLSPWAETSLSVDWYKIELDNLVGTGNNATIVQNNNPADVVRNERGTLVAVYNR YQNLSELSTSGIDVELRQRWRTEAAGNFGLNTAYTHVRDYRRPTVVGGPLQDYAGSNLGPSLPRNKATTTLDWNLGTISA ALTWYYTGGYDQKASAAASAVQSRVGDYNQFDLYLGYTGIDALTLYAKIENLADKQPPVDASFPGIRAPYDFTQYDLRGR YFTVGVDYRF >Mature_889_residues AHCTAPCSWMPCVKRPMPYLLSLAVLSVLIPLAHADEATPATGKTLATVSVTGSNIKRSDSEGPNPVQVIDRQQLEQSGK VTVADALRSISANTGNATNETTNNGWASGSAGIGLRGLSQKNTLVLLNGRRLANYGFPANGLGDTFVNLNALPLVAVERI EVLKDGASAVYGSDAVAGVVNIITRQDFQGAELGLSGGTSDQGGMDTQRAKFVGGIGDLDSDGYNILFSFDAYNRDRLDQ DQRALTRSGIYSDLPGGRWNGWSAKGARYLVGGRSVPMLDAQGNCPAGTVLTASAPIDGLAGDTCGFNQAPFTTLIPSTK RYQAYTNATFRLSDSVEAFGEALYSEVKGVSIFGSSPYFTLEGGRFALNASTGLAEPVSNLLPASSPYNPYGTAVPIEYT FFDLGQTVKTNRSQSYRFLGGVRGTTERWDWEAAAFAARSTEHETVSGGFANRFTLAQALADGSYNLLDPAATPQAVIDG INLSTLRPAQSTLRGVDAKVSGNLFELPAGSVGFAAGAEWRQEELVSRNPLQIDQGLQIRPAIAAVDGERKVSALYAEVN VPLLPSLELQLAGRGDHYSDFGDAFSPKASLRWQPLDAVLVRAAASRGFRAPSLSENAASTNISYGSVVDPYDPDVPGSR QNPTFFTVGNTALDPERTRSYNLGVVLSPWAETSLSVDWYKIELDNLVGTGNNATIVQNNNPADVVRNERGTLVAVYNRY QNLSELSTSGIDVELRQRWRTEAAGNFGLNTAYTHVRDYRRPTVVGGPLQDYAGSNLGPSLPRNKATTTLDWNLGTISAA LTWYYTGGYDQKASAAASAVQSRVGDYNQFDLYLGYTGIDALTLYAKIENLADKQPPVDASFPGIRAPYDFTQYDLRGRY FTVGVDYRF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=168, Percent_Identity=31.547619047619, Blast_Score=78, Evalue=3e-15, Organism=Escherichia coli, GI1790405, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 95358; Mature: 95227
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHCTAPCSWMPCVKRPMPYLLSLAVLSVLIPLAHADEATPATGKTLATVSVTGSNIKRS CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC DSEGPNPVQVIDRQQLEQSGKVTVADALRSISANTGNATNETTNNGWASGSAGIGLRGLS CCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCC QKNTLVLLNGRRLANYGFPANGLGDTFVNLNALPLVAVERIEVLKDGASAVYGSDAVAGV CCCEEEEEECCEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH VNIITRQDFQGAELGLSGGTSDQGGMDTQRAKFVGGIGDLDSDGYNILFSFDAYNRDRLD HHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC QDQRALTRSGIYSDLPGGRWNGWSAKGARYLVGGRSVPMLDAQGNCPAGTVLTASAPIDG HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEECCCCCC LAGDTCGFNQAPFTTLIPSTKRYQAYTNATFRLSDSVEAFGEALYSEVKGVSIFGSSPYF CCCCCCCCCCCCCCEECCCCHHEEEECCCEEEECCHHHHHHHHHHHHHCCEEEECCCCEE TLEGGRFALNASTGLAEPVSNLLPASSPYNPYGTAVPIEYTFFDLGQTVKTNRSQSYRFL EECCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHCCCCCCEEEE GGVRGTTERWDWEAAAFAARSTEHETVSGGFANRFTLAQALADGSYNLLDPAATPQAVID CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHC GINLSTLRPAQSTLRGVDAKVSGNLFELPAGSVGFAAGAEWRQEELVSRNPLQIDQGLQI CCCCCCCCCHHHHHHCCCCEECCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEE RPAIAAVDGERKVSALYAEVNVPLLPSLELQLAGRGDHYSDFGDAFSPKASLRWQPLDAV ECEEEECCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCHHHH LVRAAASRGFRAPSLSENAASTNISYGSVVDPYDPDVPGSRQNPTFFTVGNTALDPERTR HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHC SYNLGVVLSPWAETSLSVDWYKIELDNLVGTGNNATIVQNNNPADVVRNERGTLVAVYNR CCCCCEEECCCCCCCCEEEEEEEEECCEECCCCCEEEEECCCCHHHHCCCCCCEEEEEHH YQNLSELSTSGIDVELRQRWRTEAAGNFGLNTAYTHVRDYRRPTVVGGPLQDYAGSNLGP HCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEECCCHHHHCCCCCCC SLPRNKATTTLDWNLGTISAALTWYYTGGYDQKASAAASAVQSRVGDYNQFDLYLGYTGI CCCCCCCCEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCH DALTLYAKIENLADKQPPVDASFPGIRAPYDFTQYDLRGRYFTVGVDYRF HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEECC >Mature Secondary Structure AHCTAPCSWMPCVKRPMPYLLSLAVLSVLIPLAHADEATPATGKTLATVSVTGSNIKRS CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC DSEGPNPVQVIDRQQLEQSGKVTVADALRSISANTGNATNETTNNGWASGSAGIGLRGLS CCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCC QKNTLVLLNGRRLANYGFPANGLGDTFVNLNALPLVAVERIEVLKDGASAVYGSDAVAGV CCCEEEEEECCEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH VNIITRQDFQGAELGLSGGTSDQGGMDTQRAKFVGGIGDLDSDGYNILFSFDAYNRDRLD HHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC QDQRALTRSGIYSDLPGGRWNGWSAKGARYLVGGRSVPMLDAQGNCPAGTVLTASAPIDG HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEECCCCCC LAGDTCGFNQAPFTTLIPSTKRYQAYTNATFRLSDSVEAFGEALYSEVKGVSIFGSSPYF CCCCCCCCCCCCCCEECCCCHHEEEECCCEEEECCHHHHHHHHHHHHHCCEEEECCCCEE TLEGGRFALNASTGLAEPVSNLLPASSPYNPYGTAVPIEYTFFDLGQTVKTNRSQSYRFL EECCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHCCCCCCEEEE GGVRGTTERWDWEAAAFAARSTEHETVSGGFANRFTLAQALADGSYNLLDPAATPQAVID CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHC GINLSTLRPAQSTLRGVDAKVSGNLFELPAGSVGFAAGAEWRQEELVSRNPLQIDQGLQI CCCCCCCCCHHHHHHCCCCEECCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEE RPAIAAVDGERKVSALYAEVNVPLLPSLELQLAGRGDHYSDFGDAFSPKASLRWQPLDAV ECEEEECCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCHHHH LVRAAASRGFRAPSLSENAASTNISYGSVVDPYDPDVPGSRQNPTFFTVGNTALDPERTR HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHC SYNLGVVLSPWAETSLSVDWYKIELDNLVGTGNNATIVQNNNPADVVRNERGTLVAVYNR CCCCCEEECCCCCCCCEEEEEEEEECCEECCCCCEEEEECCCCHHHHCCCCCCEEEEEHH YQNLSELSTSGIDVELRQRWRTEAAGNFGLNTAYTHVRDYRRPTVVGGPLQDYAGSNLGP HCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEECCCHHHHCCCCCCC SLPRNKATTTLDWNLGTISAALTWYYTGGYDQKASAAASAVQSRVGDYNQFDLYLGYTGI CCCCCCCCEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCH DALTLYAKIENLADKQPPVDASFPGIRAPYDFTQYDLRGRYFTVGVDYRF HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]