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The map label for this gene is rhgB

Identifier: 21244230

GI number: 21244230

Start: 4143734

End: 4145335

Strand: Direct

Name: rhgB

Synonym: XAC3505

Alternate gene names: NA

Gene position: 4143734-4145335 (Clockwise)

Preceding gene: 21244229

Following gene: 21244234

Centisome position: 80.06

GC content: 64.73

Gene sequence:

>1602_bases
GTGCCTCGCAATCGTCCACATACCTTCGCCTGCGCGCTGCTGCTCTATGCCGGCGTCAGCGCACCTGCGCTGGCCGACTT
CGGGATCAGCCGCAGCGGCGACCGCGTGATCGTCGACAGCGGCGCCGAGCTGGTGTTTGCGGTCGATGCCCGGAATGGCG
ACATCGTCTCGATGCGCTATCGCGACAACGAACTGCAGACCACCGAATCGAAGGGCTCGCACATCGCTTCGGGGCTGGGC
AGTGCCAGTGTGGATGCACGCATCGTTGGCGGGACGATCGTGGTGTCGGCCAAGGCCGGCGACTTGGTCCAGTACTACAT
CGCGCGCAAGGGCCGCAACGCGATCTACATGGCCACCGATGCGCCAAGCTTGATGCCGGTGGGCGAATTGCGCTTCGTCG
CCCGCTTGAACGTGTCCACGTTGCCGAATGCGCAGCAGGAGCCCGATTCCAATGTCGGCAAAGCGATCGAAGGCAACGAT
GTCTTTCTATTGCCGGATGGGCGCACCAGTTCCAAGTTCTATTCCGCCCGTCGAATGATGGACGACCAGGTGCATGGCGT
CAGCGGCTCTGGCGTTGCCGTGTTCATGCTGACGGGCAACCGCGAGCGCAGCGCGGGCGGCCCGTTCTTCAAGGACATCG
CGACACAGAAAACCAGCGTGACGCATGAGCTCTATCACTACATGTATTCCGATCACACCCAGACCGAAGCGTTTCGCGGC
GGCCTGCACGGTGTGTACGGGCTGCTGTTCACCGATGGGAGCTCGCCGTCGAGTGCGCAACTGGACACCGCCTTCGTCGA
TGCCACGCTGGGCCTGAGCGGTTATTTGCCGGCAAGCGGGCGCGGCACCGTGAGCGGGCACGTCGGCGGCGTGTTGCCGG
GCCAGCCGGCCGTCATCGGTCTGCGCAATGCGCAGGCGCAGTACTGGGCCACTGCCGACGGCAGCGGCGACTACCGGGTG
ACGGGTGTTCGCCCGGGCAGCTATCGCATGACGCTCTACCAGAACGAACTAGACGTCGCACAACGCAACATCGAGGTTTC
CGCCGGCGCCACTGCGCACGCCGCACTGCAGGCAGTCGTTTTGCCGGGCACGGTGAAGTGGCAGATCGGCATTCCCGATG
GCACGCCGGCAGGGTTCAGATATGCGGACCTGTTACCGCGGGCGCACCCTTCCGATGCGCGCATGCACTGGTCTGCGGTG
ACCTACACCGTGGGATCGAGCAGCCTGAGCAGCTTTCCGGCGGTGCAGTGGCGCGGCATCAACACCCCGAGCCGGATCGA
CTTCACCCTGCCCGCCAACGAGGTGCGCGGCTATCGCCTGCGTATCTTCGTGCCGTTGGCACAGGGCAGCGCACGTCCGC
AGATCAGCGTGAATGCACGCTGGAACGGCTCGGTGCCTGCCGCGCCCACGCAGCCAAAGACACGCGGCATCACGCGCGGC
ACTGCGCGTGGCAACAACACCCTGTACGAAGTGGACATCCCCGCCTCTGCCTTGCATGCCGGCAACAACCGCATCGAGAT
CGGCATTGCCTCCGGCTCCCCGGACAACGGTTACCTCAGCCCGGCAATCGTGTTCGACAGCATCCAGCTGGTAGCGTTAT
AG

Upstream 100 bases:

>100_bases
GCTGGAATTTCGAACAGTGCGCACAGTCTCCGTCTTCAGCACTCGCCTGGCATCGCGCGCACGCATCGCGACCATGCCTT
GCTTCCGGACACTCACCCGC

Downstream 100 bases:

>100_bases
CAGCGTCCGAACACACGATCCGCGCAGCTGCCAGGCATGCGCGGCTGGTGCGTGGCGTCGGCATGCAGCGCTCAGCCGTT
CCGATGTTCTTGGCACCCGC

Product: rhamnogalacturonase B

Products: NA

Alternate protein names: Truncated Rhamnogalacturonase B; Exported Rhamnogalacturonase; Beta Strand Repeat-Containing Protein; Rhamnogalacturonase B Protein

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MPRNRPHTFACALLLYAGVSAPALADFGISRSGDRVIVDSGAELVFAVDARNGDIVSMRYRDNELQTTESKGSHIASGLG
SASVDARIVGGTIVVSAKAGDLVQYYIARKGRNAIYMATDAPSLMPVGELRFVARLNVSTLPNAQQEPDSNVGKAIEGND
VFLLPDGRTSSKFYSARRMMDDQVHGVSGSGVAVFMLTGNRERSAGGPFFKDIATQKTSVTHELYHYMYSDHTQTEAFRG
GLHGVYGLLFTDGSSPSSAQLDTAFVDATLGLSGYLPASGRGTVSGHVGGVLPGQPAVIGLRNAQAQYWATADGSGDYRV
TGVRPGSYRMTLYQNELDVAQRNIEVSAGATAHAALQAVVLPGTVKWQIGIPDGTPAGFRYADLLPRAHPSDARMHWSAV
TYTVGSSSLSSFPAVQWRGINTPSRIDFTLPANEVRGYRLRIFVPLAQGSARPQISVNARWNGSVPAAPTQPKTRGITRG
TARGNNTLYEVDIPASALHAGNNRIEIGIASGSPDNGYLSPAIVFDSIQLVAL

Sequences:

>Translated_533_residues
MPRNRPHTFACALLLYAGVSAPALADFGISRSGDRVIVDSGAELVFAVDARNGDIVSMRYRDNELQTTESKGSHIASGLG
SASVDARIVGGTIVVSAKAGDLVQYYIARKGRNAIYMATDAPSLMPVGELRFVARLNVSTLPNAQQEPDSNVGKAIEGND
VFLLPDGRTSSKFYSARRMMDDQVHGVSGSGVAVFMLTGNRERSAGGPFFKDIATQKTSVTHELYHYMYSDHTQTEAFRG
GLHGVYGLLFTDGSSPSSAQLDTAFVDATLGLSGYLPASGRGTVSGHVGGVLPGQPAVIGLRNAQAQYWATADGSGDYRV
TGVRPGSYRMTLYQNELDVAQRNIEVSAGATAHAALQAVVLPGTVKWQIGIPDGTPAGFRYADLLPRAHPSDARMHWSAV
TYTVGSSSLSSFPAVQWRGINTPSRIDFTLPANEVRGYRLRIFVPLAQGSARPQISVNARWNGSVPAAPTQPKTRGITRG
TARGNNTLYEVDIPASALHAGNNRIEIGIASGSPDNGYLSPAIVFDSIQLVAL
>Mature_532_residues
PRNRPHTFACALLLYAGVSAPALADFGISRSGDRVIVDSGAELVFAVDARNGDIVSMRYRDNELQTTESKGSHIASGLGS
ASVDARIVGGTIVVSAKAGDLVQYYIARKGRNAIYMATDAPSLMPVGELRFVARLNVSTLPNAQQEPDSNVGKAIEGNDV
FLLPDGRTSSKFYSARRMMDDQVHGVSGSGVAVFMLTGNRERSAGGPFFKDIATQKTSVTHELYHYMYSDHTQTEAFRGG
LHGVYGLLFTDGSSPSSAQLDTAFVDATLGLSGYLPASGRGTVSGHVGGVLPGQPAVIGLRNAQAQYWATADGSGDYRVT
GVRPGSYRMTLYQNELDVAQRNIEVSAGATAHAALQAVVLPGTVKWQIGIPDGTPAGFRYADLLPRAHPSDARMHWSAVT
YTVGSSSLSSFPAVQWRGINTPSRIDFTLPANEVRGYRLRIFVPLAQGSARPQISVNARWNGSVPAAPTQPKTRGITRGT
ARGNNTLYEVDIPASALHAGNNRIEIGIASGSPDNGYLSPAIVFDSIQLVAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56602; Mature: 56471

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00141 ASP_PROTEASE ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNRPHTFACALLLYAGVSAPALADFGISRSGDRVIVDSGAELVFAVDARNGDIVSMRY
CCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCEEEEEE
RDNELQTTESKGSHIASGLGSASVDARIVGGTIVVSAKAGDLVQYYIARKGRNAIYMATD
ECCCCCCCCCCCCHHHHCCCCCCCCEEEECCEEEEEECCCCHHEEHHHHCCCCEEEEEEC
APSLMPVGELRFVARLNVSTLPNAQQEPDSNVGKAIEGNDVFLLPDGRTSSKFYSARRMM
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCHHHHHHHHHH
DDQVHGVSGSGVAVFMLTGNRERSAGGPFFKDIATQKTSVTHELYHYMYSDHTQTEAFRG
HHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHC
GLHGVYGLLFTDGSSPSSAQLDTAFVDATLGLSGYLPASGRGTVSGHVGGVLPGQPAVIG
CCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCEEEE
LRNAQAQYWATADGSGDYRVTGVRPGSYRMTLYQNELDVAQRNIEVSAGATAHAALQAVV
EECCCCEEEEECCCCCCEEEEEECCCCEEEEEEECCHHHHHHCEEEECCCCHHHEEEEEE
LPGTVKWQIGIPDGTPAGFRYADLLPRAHPSDARMHWSAVTYTVGSSSLSSFPAVQWRGI
ECCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECC
NTPSRIDFTLPANEVRGYRLRIFVPLAQGSARPQISVNARWNGSVPAAPTQPKTRGITRG
CCCCEEEEEECHHHCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
TARGNNTLYEVDIPASALHAGNNRIEIGIASGSPDNGYLSPAIVFDSIQLVAL
CCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCCCEECCEEEEEEEEEEEC
>Mature Secondary Structure 
PRNRPHTFACALLLYAGVSAPALADFGISRSGDRVIVDSGAELVFAVDARNGDIVSMRY
CCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCEEEEEE
RDNELQTTESKGSHIASGLGSASVDARIVGGTIVVSAKAGDLVQYYIARKGRNAIYMATD
ECCCCCCCCCCCCHHHHCCCCCCCCEEEECCEEEEEECCCCHHEEHHHHCCCCEEEEEEC
APSLMPVGELRFVARLNVSTLPNAQQEPDSNVGKAIEGNDVFLLPDGRTSSKFYSARRMM
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCHHHHHHHHHH
DDQVHGVSGSGVAVFMLTGNRERSAGGPFFKDIATQKTSVTHELYHYMYSDHTQTEAFRG
HHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHC
GLHGVYGLLFTDGSSPSSAQLDTAFVDATLGLSGYLPASGRGTVSGHVGGVLPGQPAVIG
CCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCEEEE
LRNAQAQYWATADGSGDYRVTGVRPGSYRMTLYQNELDVAQRNIEVSAGATAHAALQAVV
EECCCCEEEEECCCCCCEEEEEECCCCEEEEEEECCHHHHHHCEEEECCCCHHHEEEEEE
LPGTVKWQIGIPDGTPAGFRYADLLPRAHPSDARMHWSAVTYTVGSSSLSSFPAVQWRGI
ECCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECC
NTPSRIDFTLPANEVRGYRLRIFVPLAQGSARPQISVNARWNGSVPAAPTQPKTRGITRG
CCCCEEEEEECHHHCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
TARGNNTLYEVDIPASALHAGNNRIEIGIASGSPDNGYLSPAIVFDSIQLVAL
CCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCCCEECCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA