| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is htrB [H]
Identifier: 21244190
GI number: 21244190
Start: 4090809
End: 4091729
Strand: Direct
Name: htrB [H]
Synonym: XAC3465
Alternate gene names: 21244190
Gene position: 4090809-4091729 (Clockwise)
Preceding gene: 21244188
Following gene: 77748717
Centisome position: 79.04
GC content: 65.8
Gene sequence:
>921_bases ATGTCCGAGTCCGCCAACGTCGCCGTCCGCCCTTCCCTGCGCAACCCCAAGCATTGGCCGATGTATCTGGGCCTGGCGGT GATGGTGGTGGCGGGGCGCCTGCCCTGGACGCTGCAACGTGCAGTAGGCCGCGGCGTGGGCTGGATTGCGATGCGCCTGG CGGGCACACGTCGGCGCGCGGCCGAGGTCAACCTCAAACTGTGTTTCCCCGAGCAGGACGATGCCTGGCGAGCGCGGCTG TTGCGCGACAGTTTCGACGCGCTCGGCGTGGGCCTGTTCGAGTTCGCGCGCGCCTGGTGGGGCAGCATCGGTGCCATTCG ACCTGGCGTGCAGATCGAGGGCCTGGAGCATCTGCGGCAACTGCAACAGCAAAAGCGCGGCGTGTTGCTGGTGTCCGGCC ACTTCATGACGCTGGAAATGTGCGGGCGCCTGCTTTGCGACCACGTGCCGCTGGCCGGCATGTACCGCCGGCATCGCAAC CCGGTGTTCGAGTGGGCGGTCAAGCGTGGGCGCTTGCGCTATGCCACGCACATGTTCGCCAACGAAGACCTGCGCGCCAC CATCAAGCATCTCAAGCGCGGCGGTTTTCTGTGGTATGCGCCCGACCAGGACATGCGCGGCAAGGACACCGTGTTCGTGC CGTTCTTCGGACATCCGGCCTCCACCATCACCGCCACCCATCAGCTGGCGCGGTTGACCGGCTGCGCGGTAGTGCCCTAC TTCCATCGTCGCGAAGGTGGCCGTTACATCCTCAAGATCGCGCCACCGTTGGCCGACATTCCGTCCGATGACGTCATCGC CGATACCACGCAGGTCAATGCCGCGATCGAAGACATGGTGCGCGAAGCGCCGGACCAGTACCTGTGGATCCATCGGCGCT TCAAGCGCCAGCCGGGTGGACGTAGCGCGTTCTATCGCTGA
Upstream 100 bases:
>100_bases CTTCCGGAGGGTTGGCCGCCAGCGGCGCGGAGCGGGCGCCGCGCCGCTGGCGGCCAACGCATCTCATCTCAACGTGCATA ACACGCTCTAGAATTGGCGC
Downstream 100 bases:
>100_bases CGCCGACCCGGCACGCCTGCAAAGCAGGTGTGGGCGTTGCCGCTGCAAGCTCGCACATCGACGCGGTGCCGATCACCCGT ACGCACCGCGTTACTGCGGC
Product: lipid A biosynthesis lauroyl acyltransferase
Products: NA
Alternate protein names: Heat shock protein B [H]
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MSESANVAVRPSLRNPKHWPMYLGLAVMVVAGRLPWTLQRAVGRGVGWIAMRLAGTRRRAAEVNLKLCFPEQDDAWRARL LRDSFDALGVGLFEFARAWWGSIGAIRPGVQIEGLEHLRQLQQQKRGVLLVSGHFMTLEMCGRLLCDHVPLAGMYRRHRN PVFEWAVKRGRLRYATHMFANEDLRATIKHLKRGGFLWYAPDQDMRGKDTVFVPFFGHPASTITATHQLARLTGCAVVPY FHRREGGRYILKIAPPLADIPSDDVIADTTQVNAAIEDMVREAPDQYLWIHRRFKRQPGGRSAFYR
Sequences:
>Translated_306_residues MSESANVAVRPSLRNPKHWPMYLGLAVMVVAGRLPWTLQRAVGRGVGWIAMRLAGTRRRAAEVNLKLCFPEQDDAWRARL LRDSFDALGVGLFEFARAWWGSIGAIRPGVQIEGLEHLRQLQQQKRGVLLVSGHFMTLEMCGRLLCDHVPLAGMYRRHRN PVFEWAVKRGRLRYATHMFANEDLRATIKHLKRGGFLWYAPDQDMRGKDTVFVPFFGHPASTITATHQLARLTGCAVVPY FHRREGGRYILKIAPPLADIPSDDVIADTTQVNAAIEDMVREAPDQYLWIHRRFKRQPGGRSAFYR >Mature_305_residues SESANVAVRPSLRNPKHWPMYLGLAVMVVAGRLPWTLQRAVGRGVGWIAMRLAGTRRRAAEVNLKLCFPEQDDAWRARLL RDSFDALGVGLFEFARAWWGSIGAIRPGVQIEGLEHLRQLQQQKRGVLLVSGHFMTLEMCGRLLCDHVPLAGMYRRHRNP VFEWAVKRGRLRYATHMFANEDLRATIKHLKRGGFLWYAPDQDMRGKDTVFVPFFGHPASTITATHQLARLTGCAVVPYF HRREGGRYILKIAPPLADIPSDDVIADTTQVNAAIEDMVREAPDQYLWIHRRFKRQPGGRSAFYR
Specific function: Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA. Has 10 fold selectivity for lauroyl- ACP over myristoyl-ACP [H]
COG id: COG1560
COG function: function code M; Lauroyl/myristoyl acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the htrB/msbB family [H]
Homologues:
Organism=Escherichia coli, GI1787292, Length=297, Percent_Identity=38.047138047138, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI87082094, Length=294, Percent_Identity=36.0544217687075, Blast_Score=196, Evalue=1e-51, Organism=Escherichia coli, GI1788161, Length=300, Percent_Identity=27.6666666666667, Blast_Score=124, Evalue=5e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004960 - InterPro: IPR011920 [H]
Pfam domain/function: PF03279 Lip_A_acyltrans [H]
EC number: 2.3.1.-
Molecular weight: Translated: 34907; Mature: 34776
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESANVAVRPSLRNPKHWPMYLGLAVMVVAGRLPWTLQRAVGRGVGWIAMRLAGTRRRA CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCHHHH AEVNLKLCFPEQDDAWRARLLRDSFDALGVGLFEFARAWWGSIGAIRPGVQIEGLEHLRQ HEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHH LQQQKRGVLLVSGHFMTLEMCGRLLCDHVPLAGMYRRHRNPVFEWAVKRGRLRYATHMFA HHHHHCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHC NEDLRATIKHLKRGGFLWYAPDQDMRGKDTVFVPFFGHPASTITATHQLARLTGCAVVPY CCHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEECCH FHRREGGRYILKIAPPLADIPSDDVIADTTQVNAAIEDMVREAPDQYLWIHRRFKRQPGG HHHCCCCEEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC RSAFYR CCCCCC >Mature Secondary Structure SESANVAVRPSLRNPKHWPMYLGLAVMVVAGRLPWTLQRAVGRGVGWIAMRLAGTRRRA CCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCHHHH AEVNLKLCFPEQDDAWRARLLRDSFDALGVGLFEFARAWWGSIGAIRPGVQIEGLEHLRQ HEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHH LQQQKRGVLLVSGHFMTLEMCGRLLCDHVPLAGMYRRHRNPVFEWAVKRGRLRYATHMFA HHHHHCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHC NEDLRATIKHLKRGGFLWYAPDQDMRGKDTVFVPFFGHPASTITATHQLARLTGCAVVPY CCHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEECCH FHRREGGRYILKIAPPLADIPSDDVIADTTQVNAAIEDMVREAPDQYLWIHRRFKRQPGG HHHCCCCEEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC RSAFYR CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Acyltransferases [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]