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The map label for this gene is omp21 [H]

Identifier: 21244080

GI number: 21244080

Start: 3952886

End: 3953500

Strand: Direct

Name: omp21 [H]

Synonym: XAC3355

Alternate gene names: 21244080

Gene position: 3952886-3953500 (Clockwise)

Preceding gene: 21244079

Following gene: 21244081

Centisome position: 76.38

GC content: 62.93

Gene sequence:

>615_bases
ATGAACACGCTGACTCGCACCGCCCTCGCCATCGCACTGGCCGCCTCGGCCGCACCCGCCCTTGCACAGTCGGCCGGTCA
TTGGACGACCGGTTACGGTGCCGGCTATGTCTCGCCCAAGTCCAATAGCGGCACCGTCGGCGGCACCCAGGCCGAGATCA
AGGGCGCGCCGGCACTGTCGTTCACCTACGAATACTTCCTGCGCAACAACCTGGGTGTCGAAGTGCATGCGGCAGTTGCA
GGCAAGCACGACCTCGAACTGCAGGGCATCGGCAAGGTGGGCAGCTATTGGTCGGTGCCACCGAGCGTGTTGTTGCAGTA
CCACATCAACGGCTATGGCACGGTGTCGCCTTTCGTGGGAGTGGGCATCAACTACACCACCTTCCTGGGCGAAGACACCG
AGCCGACGATCGGCAGTGGCGATCTGCGCTTCGACGATTCGATCGGCGCCACCGCGCATGTCGGCGTGGACTTCATCTTC
AACGACCGCAGCGGTCTGCGCGTGGATGCGCGTTGGACCGATTCGCGCAGCAACGTCGACCTCAATGGCACGCGACTGGG
CAAGGCGCGGATCGATCCGTTGACCTTCGGTGTGTCGTACCTGGTGTATTACTAA

Upstream 100 bases:

>100_bases
CGCATCTCTGGCACACTTGCCGCCCAGGGACGTGCATCCACCGCCGGAGTTGCGGACAGGTCGGTCACGTCGCCCGTCTG
TCCGACCTACCGGGGATTCC

Downstream 100 bases:

>100_bases
GAGCGCCTGGCAACGCGACTGCGCTCACCGCCAGATGGGCACGGCCACTGCCCGGTGCGGCATGACCCCACGCGGATGCT
GCGGTTGCCGCATTTCGCGC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MNTLTRTALAIALAASAAPALAQSAGHWTTGYGAGYVSPKSNSGTVGGTQAEIKGAPALSFTYEYFLRNNLGVEVHAAVA
GKHDLELQGIGKVGSYWSVPPSVLLQYHINGYGTVSPFVGVGINYTTFLGEDTEPTIGSGDLRFDDSIGATAHVGVDFIF
NDRSGLRVDARWTDSRSNVDLNGTRLGKARIDPLTFGVSYLVYY

Sequences:

>Translated_204_residues
MNTLTRTALAIALAASAAPALAQSAGHWTTGYGAGYVSPKSNSGTVGGTQAEIKGAPALSFTYEYFLRNNLGVEVHAAVA
GKHDLELQGIGKVGSYWSVPPSVLLQYHINGYGTVSPFVGVGINYTTFLGEDTEPTIGSGDLRFDDSIGATAHVGVDFIF
NDRSGLRVDARWTDSRSNVDLNGTRLGKARIDPLTFGVSYLVYY
>Mature_204_residues
MNTLTRTALAIALAASAAPALAQSAGHWTTGYGAGYVSPKSNSGTVGGTQAEIKGAPALSFTYEYFLRNNLGVEVHAAVA
GKHDLELQGIGKVGSYWSVPPSVLLQYHINGYGTVSPFVGVGINYTTFLGEDTEPTIGSGDLRFDDSIGATAHVGVDFIF
NDRSGLRVDARWTDSRSNVDLNGTRLGKARIDPLTFGVSYLVYY

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=209, Percent_Identity=31.1004784688995, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 21598; Mature: 21598

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLTRTALAIALAASAAPALAQSAGHWTTGYGAGYVSPKSNSGTVGGTQAEIKGAPALS
CCCHHHHHHHHHHHHCCCHHHHHCCCCEECCCCCEECCCCCCCCCCCCCEEEECCCCEEH
FTYEYFLRNNLGVEVHAAVAGKHDLELQGIGKVGSYWSVPPSVLLQYHINGYGTVSPFVG
EEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHEEEEEECCCCCCCCCEE
VGINYTTFLGEDTEPTIGSGDLRFDDSIGATAHVGVDFIFNDRSGLRVDARWTDSRSNVD
CCCCEEEEECCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCC
LNGTRLGKARIDPLTFGVSYLVYY
CCCEEECCEECCEEEECEEEEEEC
>Mature Secondary Structure
MNTLTRTALAIALAASAAPALAQSAGHWTTGYGAGYVSPKSNSGTVGGTQAEIKGAPALS
CCCHHHHHHHHHHHHCCCHHHHHCCCCEECCCCCEECCCCCCCCCCCCCEEEECCCCEEH
FTYEYFLRNNLGVEVHAAVAGKHDLELQGIGKVGSYWSVPPSVLLQYHINGYGTVSPFVG
EEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHEEEEEECCCCCCCCCEE
VGINYTTFLGEDTEPTIGSGDLRFDDSIGATAHVGVDFIFNDRSGLRVDARWTDSRSNVD
CCCCEEEEECCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCC
LNGTRLGKARIDPLTFGVSYLVYY
CCCEEECCEECCEEEECEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]