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The map label for this gene is ompW [H]

Identifier: 21244079

GI number: 21244079

Start: 3952128

End: 3952769

Strand: Direct

Name: ompW [H]

Synonym: XAC3354

Alternate gene names: 21244079

Gene position: 3952128-3952769 (Clockwise)

Preceding gene: 21244078

Following gene: 21244080

Centisome position: 76.36

GC content: 63.24

Gene sequence:

>642_bases
TTGCACCCCACGAGACTTCCCATGCGTATGCACTCTACCCTCTTGTTCGCCGTCCTGGCTCCTTTCGTCAGCCTCCCCGC
ACTGGCGCAATCCAAAGGCGACTGGACCGTTGCCGTCGGCGCCCATCAGGTCGCTCCCAAATCCGACAACGGCAGCCTGG
TCGGCGGCACGCTCGACGTGGACGTGGGTAAAGACATCAAACCCACGTTTACAGCCGAATATTTCGTCGCAGACAACCTG
GGCATCGAGGTGCTGGCTGCGCTGCCGTTCGAGCACGACATTGCGATACGCGGCCTGGGCCGGGTGGGCAGCACCAAGCA
TCTGCCGCCGGTGATCTCACTGCAGTACCACTTCAATGCCCAAGGCACGTTCTCGCCGTTCGTTGGCGCCGGTATCAACT
ACACGCGCTTCTTCGGCACCGACACCCGCGGTGACCTGGCCGGCAGCAAGCTGGAGCTGGACGATTCCTGGGGCCTGGCA
CTGCATGCAGGCGTGGACTACACGCTCAGCGACCGCGGCGCACTGCGGGTCAACCTGCGCTGGATCGATATCGATCCCCA
AGCGCGCCTGGACGGCAACCATATCGGCACGGTCAATATCGACCCGCTGGTCTACGGCGTGGCCTACGTGCACCGGTTCT
GA

Upstream 100 bases:

>100_bases
TGTGACTGCAGCCATTGCAGGCACGCACATCTGAGCGCACGGCCGAATTGATCAGGATCAAGGCAGCGGCGACGCCAAGC
GCCAAGACTTCCCACATCCA

Downstream 100 bases:

>100_bases
TCCCCCGCGGCGTGGGCGCATCTCTGGCACACTTGCCGCCCAGGGACGTGCATCCACCGCCGGAGTTGCGGACAGGTCGG
TCACGTCGCCCGTCTGTCCG

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MHPTRLPMRMHSTLLFAVLAPFVSLPALAQSKGDWTVAVGAHQVAPKSDNGSLVGGTLDVDVGKDIKPTFTAEYFVADNL
GIEVLAALPFEHDIAIRGLGRVGSTKHLPPVISLQYHFNAQGTFSPFVGAGINYTRFFGTDTRGDLAGSKLELDDSWGLA
LHAGVDYTLSDRGALRVNLRWIDIDPQARLDGNHIGTVNIDPLVYGVAYVHRF

Sequences:

>Translated_213_residues
MHPTRLPMRMHSTLLFAVLAPFVSLPALAQSKGDWTVAVGAHQVAPKSDNGSLVGGTLDVDVGKDIKPTFTAEYFVADNL
GIEVLAALPFEHDIAIRGLGRVGSTKHLPPVISLQYHFNAQGTFSPFVGAGINYTRFFGTDTRGDLAGSKLELDDSWGLA
LHAGVDYTLSDRGALRVNLRWIDIDPQARLDGNHIGTVNIDPLVYGVAYVHRF
>Mature_213_residues
MHPTRLPMRMHSTLLFAVLAPFVSLPALAQSKGDWTVAVGAHQVAPKSDNGSLVGGTLDVDVGKDIKPTFTAEYFVADNL
GIEVLAALPFEHDIAIRGLGRVGSTKHLPPVISLQYHFNAQGTFSPFVGAGINYTRFFGTDTRGDLAGSKLELDDSWGLA
LHAGVDYTLSDRGALRVNLRWIDIDPQARLDGNHIGTVNIDPLVYGVAYVHRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=203, Percent_Identity=35.4679802955665, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23047; Mature: 23047

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPTRLPMRMHSTLLFAVLAPFVSLPALAQSKGDWTVAVGAHQVAPKSDNGSLVGGTLDV
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCEEECCCCCCCCEEEEEEEE
DVGKDIKPTFTAEYFVADNLGIEVLAALPFEHDIAIRGLGRVGSTKHLPPVISLQYHFNA
CCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEEEEECC
QGTFSPFVGAGINYTRFFGTDTRGDLAGSKLELDDSWGLALHAGVDYTLSDRGALRVNLR
CCCCCCHHCCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCEEECCCCEEEEEEE
WIDIDPQARLDGNHIGTVNIDPLVYGVAYVHRF
EEEECCCCCCCCCEEEEEEECHHHHHHHHHCCC
>Mature Secondary Structure
MHPTRLPMRMHSTLLFAVLAPFVSLPALAQSKGDWTVAVGAHQVAPKSDNGSLVGGTLDV
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCEEECCCCCCCCEEEEEEEE
DVGKDIKPTFTAEYFVADNLGIEVLAALPFEHDIAIRGLGRVGSTKHLPPVISLQYHFNA
CCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEEEEECC
QGTFSPFVGAGINYTRFFGTDTRGDLAGSKLELDDSWGLALHAGVDYTLSDRGALRVNLR
CCCCCCHHCCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEECCCCEEECCCCEEEEEEE
WIDIDPQARLDGNHIGTVNIDPLVYGVAYVHRF
EEEECCCCCCCCCEEEEEEECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]