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The map label for this gene is ycjD [H]

Identifier: 21243947

GI number: 21243947

Start: 3795519

End: 3795905

Strand: Reverse

Name: ycjD [H]

Synonym: XAC3222

Alternate gene names: 21243947

Gene position: 3795905-3795519 (Counterclockwise)

Preceding gene: 21243950

Following gene: 21243946

Centisome position: 73.34

GC content: 59.69

Gene sequence:

>387_bases
ATGGACACCTCCGAATCAGCCATTTTCCATGGCCTTGAGATGTCTAGGAAATCCTGGGCGTATCAGACCGCTGCCGAGCG
TTTGCTTTGGTACCGCCTGCGTGATCGGCGTCTGTTGGGATTCAAGTTCCGCAGGCAGTGTCCGGTCGGCCCGTATGTCG
CCGATTTCGCCTGCCTGGAACGTGCGCTCATCGTAGAACTTGACGGCAGCCAACATCTGGAGGCGCCCTCCGATGCCGTG
CGCGAGGCCTTCCTGCACCGAAAAGGCTTCCAGTTGCTGCGCTTCTGGAATAATGAAGTGCTGGCGCGCACCGATGCTGT
CTGCGACGCGATTGTGCAACGGCTGTGCGTTGCCCGCTTTTCTCCTCCTCCTTCCGGCGTTCGGTAG

Upstream 100 bases:

>100_bases
GACACCCAGTCGCTCGGCGACCTCTGCCACCTTGAACCCACGATCGGTCACTTGCCGGACCGCCTCGATCTTGAACTCAT
CCGTATACCGCTTACTGCTC

Downstream 100 bases:

>100_bases
GAATCTGCAAAAGGCTGCCGATATGTCCCAGACCCTCCGCATCGCCATGGCCCAGTTCGACTTCCCGGTCGGCGGCGTAG
CGCAGAACACCGATCGCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MDTSESAIFHGLEMSRKSWAYQTAAERLLWYRLRDRRLLGFKFRRQCPVGPYVADFACLERALIVELDGSQHLEAPSDAV
REAFLHRKGFQLLRFWNNEVLARTDAVCDAIVQRLCVARFSPPPSGVR

Sequences:

>Translated_128_residues
MDTSESAIFHGLEMSRKSWAYQTAAERLLWYRLRDRRLLGFKFRRQCPVGPYVADFACLERALIVELDGSQHLEAPSDAV
REAFLHRKGFQLLRFWNNEVLARTDAVCDAIVQRLCVARFSPPPSGVR
>Mature_128_residues
MDTSESAIFHGLEMSRKSWAYQTAAERLLWYRLRDRRLLGFKFRRQCPVGPYVADFACLERALIVELDGSQHLEAPSDAV
REAFLHRKGFQLLRFWNNEVLARTDAVCDAIVQRLCVARFSPPPSGVR

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=103, Percent_Identity=48.5436893203884, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14770; Mature: 14770

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTSESAIFHGLEMSRKSWAYQTAAERLLWYRLRDRRLLGFKFRRQCPVGPYVADFACLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHH
RALIVELDGSQHLEAPSDAVREAFLHRKGFQLLRFWNNEVLARTDAVCDAIVQRLCVARF
HHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
SPPPSGVR
CCCCCCCC
>Mature Secondary Structure
MDTSESAIFHGLEMSRKSWAYQTAAERLLWYRLRDRRLLGFKFRRQCPVGPYVADFACLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHH
RALIVELDGSQHLEAPSDAVREAFLHRKGFQLLRFWNNEVLARTDAVCDAIVQRLCVARF
HHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
SPPPSGVR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]