| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is ponB [H]
Identifier: 21243836
GI number: 21243836
Start: 3652456
End: 3654900
Strand: Reverse
Name: ponB [H]
Synonym: XAC3109
Alternate gene names: 21243836
Gene position: 3654900-3652456 (Counterclockwise)
Preceding gene: 21243838
Following gene: 21243835
Centisome position: 70.62
GC content: 68.02
Gene sequence:
>2445_bases GTGCCCCGACGCCACGACAACGACGCTCCCGACGATTTCGAGGACGACACCAACGCGCAAGGCTCCCGCTGGCAACGCAG ACTCATCGTCTGGGGATTTGCCGCGTTCGCGCTGGCGCTCGGTTTCCTGATTCCCTATACGGTGTATCTGAACAAGCAGG TCACCCAGCGCTTTGGCGAACTGCGTTGGCAGATCCCCACCCGCGTGTACGGCCGGCCGCTGGTGCTCGTGCCGGGCAAC GCACTGGATGCGGCCACGCTGAAGACCGAGCTGGACGCGGCGTCGTACCGCGACGACGGTCAGGCGAAGCTGGCCGGCAC CTACCAGCAGGACGGCAGCCGCTTCACCATCGCCAGCCGCGGCTACATCGATGTGGATGGACGCGTGCCGGCGCGCCGTA TCGAAGTCAGCCTGGCCGGTGGGCGCGTGGCCAGCCTGCGCGACGCCGGCGACCGCAAGGCGCTCAAGAGCGCACGCCTG GACCCGGCGCGCATCGCCACCCTGTACGGGCAGAAGCAGGAAGAACGCCGCCTGGTGCGCATGGAAGAAGTGCCCGAGCT GCTGGTCACCGGCCTGCAGGCGGTGGAAGACCGCGACTTCAACAGCCATCACGGCATCGATCTGAGCGGCATGGTGCGCG CGGCCTGGATCATGGCGCGCTCCGGCGGCCAGGTCCGCCAGGGCGCCAGCACCCTGACCCAGCAGTTGGCCCGTAGCGGC CTGCTCGGCATCGGCAAGGAACAGACGCTCACGCGCAAGTTCAACGAGATCCTGTACGCGGTGATCATGGAGGCGCGCTA CGACAAGCGCACCATCCTGGAGGCCTATCTCAACCAGGTCTATCTGGGCCAGCGCGGCGGGCAGGCGATCCACGGCGTGT CGTCGGGCGCGGAACTGTGGTTCGGTCGCGAACTCAATTCGATGACCACCGAGCAGATCGCATTGTTGATCGGGCTGGTC AAGGGGCCGTCGTACTACGACCCGCGGCGCAACCCGGAACGCGCGCTGGACCGACGCAATTTCGTGCTCGGCAAGCTGCA CGAAAACAATCTGATCAACGACGCCGAATACAAGCGCGCGCTGGCTGCGCCGTTGGGCGTGCCGATCGAGCCTGGCCTGG TCGCTGCCAACCGTTTTCCGGCGTATGTGGACCTGGTGCGGCGCCAGCTGGCGCACGACTATCCGGAAGGCGTGCTGCAG GGCGCCGGCATGAGCGTGCTTACCGGCATGTCGCCGTCGGCGCAGGCGTATGCCGAAGGCGCAGTGACCGGCACCATCAA GCGGCTGGACAACAAGAAACGCCCGCCGCTGCAGGCGGGGTTGGTGCTTACCGACGTGCATAACGGCGATGTGCTCGCCG TGGTCGGCAGCCGCGATGTGGCCAAGCCGGGTTTCAATCGTGCGGTGGAAGCGCAGCGGCAGGTGGGCTCGTTGCTCAAG CCGTTCGTCTACATGCTGGCCTTGGCCTCGCCGGACCGCTGGGCGCTGTCCAGCTGGGTCGACGACTCGCCGGTGACCGT GCAGCTCAGCCGCGGCAAGACCTGGTCGCCGGGCAATTCCGACAACCGCAGCCACGGCACGGTGCGCCTGGTCGATGCGC TGGCGCATTCCTACAACCAGGCCACGGTGCGGGTGGGCATGCAGGTCGGCGCGGACCGCATCGCGCAGCTGATCCAGGTG TTGGCCGGTATCAAGGCCGAGCCCAATCCGGCGCTGATCCTGGGCACCACCGACCAGAGCCCGTATGGCATGGCGCAGCT GTATCAGTTCCTGGCAGCCGGCGGCGAGATCCAGCCGCTGCATGCGGTGCGCGGTGTGCTCGACCCGCAAGGCAAGCTGC TCAAGCGCTACGACAAGACCCCGGCGCCGGCGCAGGAAGGCGATTCGGTGGCCGCCAACCTCATCAGCATCGGCCTGCAG CAGGTGGTCAGCGGCGGCACCGCGCGGCAGTTGCTGGGCGATGGCCTGGGGCGCCTGTCGTCGGCCGGCAAGACCGGTAC CTCCAACGACGGTCGCGACAGCTGGTATGCCGGCTACACCGGCGATCATCTGGCGGTGATCTGGATGGGCAACGACCAGA ACGCCGAAACCGGCTTGTATGGCGCCACCGGCGCGATGCGGGTGTGGTCGAGCATCTTCGCCCGCCTGCCGAGTGCGCCA TTGAAGGTCAGCGGCAAAGGTCTGGATTGGCAGTGGGTGGACGCCAGCGGCACCGGCGTCACCGACCCGGGTTGCCCGGG TGCGCGCCAGTTCCCGTTCGTGGTCGGCTTCACGCCGGCCTACGCGCCGTGCGCGGGCAACGCGCCGTCGATCGAAGCCG CGCCCGGCGAAGCGGCCGCACCTGCCGAACAATCCAGCGGCGGTGGCTGGCGCCGCTTCTTCGGTCTGGAAAAGAAGCCC GAAGACCCTGCCGCCGCACCTGCCGCGGCCCCACCCACGCGTTGA
Upstream 100 bases:
>100_bases CGGTCGCTTTGTTAGCCGCTCTTAACGGCCGACGGGCCGGCAGGTCACAGCCATGACAGCGCTGCGCTAGACTCGCCGCA CTCTACATTCTCGCATTCCT
Downstream 100 bases:
>100_bases TTGGAACGACCCCATGAACCGAATGCACCGTTTGCTCGCCCCGATCGGCGTCCTGGCCGCACTCACCGCCTGCGTCAGCG CACCACCCGCGCCGCCGCCG
Product: penicillin-binding protein 1B
Products: NA
Alternate protein names: PBP-1b; PBP1b; Murein polymerase; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Peptidoglycan glycosyltransferase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 814; Mature: 813
Protein sequence:
>814_residues MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGN ALDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASRGYIDVDGRVPARRIEVSLAGGRVASLRDAGDRKALKSARL DPARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLV KGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPIEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQ GAGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLK PFVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQV LAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQ QVVSGGTARQLLGDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP LKVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGWRRFFGLEKKP EDPAAAPAAAPPTR
Sequences:
>Translated_814_residues MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGN ALDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASRGYIDVDGRVPARRIEVSLAGGRVASLRDAGDRKALKSARL DPARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLV KGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPIEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQ GAGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLK PFVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQV LAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQ QVVSGGTARQLLGDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP LKVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGWRRFFGLEKKP EDPAAAPAAAPPTR >Mature_813_residues PRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGNA LDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASRGYIDVDGRVPARRIEVSLAGGRVASLRDAGDRKALKSARLD PARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSGL LGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLVK GPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPIEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQG AGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLKP FVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQVL AGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQ VVSGGTARQLLGDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAPL KVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGWRRFFGLEKKPE DPAAAPAAAPPTR
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=700, Percent_Identity=35.8571428571429, Blast_Score=390, Evalue=1e-109, Organism=Escherichia coli, GI87082258, Length=286, Percent_Identity=32.8671328671329, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI1788867, Length=544, Percent_Identity=27.9411764705882, Blast_Score=121, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011813 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: =2.4.1.129 [H]
Molecular weight: Translated: 87801; Mature: 87670
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LRWQIPTRVYGRPLVLVPGNALDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASR HEEECCHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCEEEEEEC GYIDVDGRVPARRIEVSLAGGRVASLRDAGDRKALKSARLDPARIATLYGQKQEERRLVR CEEEECCCCCCEEEEEEECCCCEEHHHCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH MEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELW CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEE FGRELNSMTTEQIALLIGLVKGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRA ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHH LAAPLGVPIEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQGAGMSVLTGMSPSAQAYAEG HHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEECCCCCHHHHHCC AVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLK CHHHHHHHHCCCCCCCHHHCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH PFVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQ HHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC ATVRVGMQVGADRIAQLIQVLAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPL EEEEEHHHHCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHH HAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQVVSGGTARQLLGDGLGRLS HHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC LKVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAA EEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC PAEQSSGGGWRRFFGLEKKPEDPAAAPAAAPPTR CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LRWQIPTRVYGRPLVLVPGNALDAATLKTELDAASYRDDGQAKLAGTYQQDGSRFTIASR HEEECCHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCEEEEEEC GYIDVDGRVPARRIEVSLAGGRVASLRDAGDRKALKSARLDPARIATLYGQKQEERRLVR CEEEECCCCCCEEEEEEECCCCEEHHHCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH MEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELW CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEE FGRELNSMTTEQIALLIGLVKGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRA ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHH LAAPLGVPIEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQGAGMSVLTGMSPSAQAYAEG HHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEECCCCCHHHHHCC AVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSRDVAKPGFNRAVEAQRQVGSLLK CHHHHHHHHCCCCCCCHHHCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH PFVYMLALASPDRWALSSWVDDSPVTVQLSRGKTWSPGNSDNRSHGTVRLVDALAHSYNQ HHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC ATVRVGMQVGADRIAQLIQVLAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPL EEEEEHHHHCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHH HAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQVVSGGTARQLLGDGLGRLS HHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC LKVSGKGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAA EEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC PAEQSSGGGWRRFFGLEKKPEDPAAAPAAAPPTR CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]