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The map label for this gene is pelB [H]

Identifier: 21243713

GI number: 21243713

Start: 3490628

End: 3491689

Strand: Reverse

Name: pelB [H]

Synonym: XAC2986

Alternate gene names: 21243713

Gene position: 3491689-3490628 (Counterclockwise)

Preceding gene: 21243714

Following gene: 21243712

Centisome position: 67.47

GC content: 60.26

Gene sequence:

>1062_bases
ATGATCATCAAGACGCTCCAGGGCGCACTCGCGCTTGTACTGTCCGCTTGCGCCGCGGGCGCGATTGCCGGCCCGGTCGG
CTACGGTGCCGCCACCACCGGCGGCGGCAACAAGACAGCGGTCAACGTGGCGACGTTCGAAGCGGTGCAGGCCGCCATCG
ACAACTATTCCGGTAGCGGCGGGCTGGTGCTCAACTACACCGGCCAGTTCGACTTCGGCACCATCAAGGACGTGTGCGCG
CAATGGAAGCTGCCGGCCAAGACAGTGCAGATCAAGAACAAGAGCGATATCACGATCAAGGGCGCCAATGGCTCGTCGGC
GAACTTCGGCGTGCGTGTGGTGGGCGATGCGCACAACGTGATCGTCCAGAACATGACCATCGGTCTGCTGCAAGGCGGTG
AAGATGCCGATTCGATTTCGCTGGAAGGCAACTCCAGCGGCGAGCCGTCCAAGATCTGGATCGACCACAACACCATCTTC
GCCTCGCTCACCAAGTGTTCCGGTGCGGGCGATGCCTCCTTCGATGGCGGCATCGATATGAAGAAGGGCGTGCACCATGT
CACCGTGTCCTACAACTATGTCTACAACTATCAAAAGGTCGCGCTCAATGGCTACAGCGACAGCGACACCAAGAACTCGG
CTGCACGCACCACGTATCACCATAACCGCTTCGAGAACGTGGAATCGCGCTTGCCATTGCAGCGGCGCGGCTTGAGCCAC
GTCTACAACAACTACTTCAACAATGTGTTCACCTCAGGCATCAACGTGCGCATGGGTGGGGTGGCGAAGATCGAGTCGAA
CTACTTCGAGAACATCAAGAACCCGGTGACCTCGCGCGACAGCAGCGAGATCGGCTACTGGGACCTGATCAACAACTACG
TTGGCAGCGGCATCACCTGGAGCACGCCGGACGGCAGCAAACCCTACGCCAATGCCACCAACTGGGTGAGCTCCAAGGTG
TTCCTGGAGTCGCTGGGCTACATCTACACCGTGACACCGGCGGCACAGGTCAAGGCCAAGGTGATCGCCACGGCGGGTGC
GGGCAAGAACCTGGCGGAGTGA

Upstream 100 bases:

>100_bases
ATCGCGCGAAGAATGCAGCCCCCCACGCACCGCATTGCTGTCGTCGCCACCACTGCGCAGACGGCCTGCATTGCTTGTCG
ACTTCTTTGGGAGAGGCTAC

Downstream 100 bases:

>100_bases
CCGGGCGCGCGCGGAGTCGCGAATGAGCGGCAGCGAGCACTGGTCAGGTGGACGTGGAGGGCGCGCAGGAAGCGCAGCGC
TCTGGTCTACAGGACGATTC

Product: pectate lyase II

Products: NA

Alternate protein names: Pectate lyase B; PLB; Pectate lyase II; PEL II [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MIIKTLQGALALVLSACAAGAIAGPVGYGAATTGGGNKTAVNVATFEAVQAAIDNYSGSGGLVLNYTGQFDFGTIKDVCA
QWKLPAKTVQIKNKSDITIKGANGSSANFGVRVVGDAHNVIVQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIF
ASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
VYNNYFNNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWSTPDGSKPYANATNWVSSKV
FLESLGYIYTVTPAAQVKAKVIATAGAGKNLAE

Sequences:

>Translated_353_residues
MIIKTLQGALALVLSACAAGAIAGPVGYGAATTGGGNKTAVNVATFEAVQAAIDNYSGSGGLVLNYTGQFDFGTIKDVCA
QWKLPAKTVQIKNKSDITIKGANGSSANFGVRVVGDAHNVIVQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIF
ASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
VYNNYFNNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWSTPDGSKPYANATNWVSSKV
FLESLGYIYTVTPAAQVKAKVIATAGAGKNLAE
>Mature_353_residues
MIIKTLQGALALVLSACAAGAIAGPVGYGAATTGGGNKTAVNVATFEAVQAAIDNYSGSGGLVLNYTGQFDFGTIKDVCA
QWKLPAKTVQIKNKSDITIKGANGSSANFGVRVVGDAHNVIVQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIF
ASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
VYNNYFNNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWSTPDGSKPYANATNWVSSKV
FLESLGYIYTVTPAAQVKAKVIATAGAGKNLAE

Specific function: Involved in maceration and soft-rotting of plant tissue [H]

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 1 family. PLADES subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002022
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00544 Pec_lyase_C [H]

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 37457; Mature: 37457

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKTLQGALALVLSACAAGAIAGPVGYGAATTGGGNKTAVNVATFEAVQAAIDNYSGSG
CEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEEEHHHHHHHHHHHCCCCCC
GLVLNYTGQFDFGTIKDVCAQWKLPAKTVQIKNKSDITIKGANGSSANFGVRVVGDAHNV
CEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCCEEEECCCCEE
IVQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIFASLTKCSGAGDASFDGGIDM
EEECEEEEEEECCCCCCEEEECCCCCCCCCEEEEECCEEEEEEHHCCCCCCCCCCCCCCC
KKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
CCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
VYNNYFNNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITW
HHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEE
STPDGSKPYANATNWVSSKVFLESLGYIYTVTPAAQVKAKVIATAGAGKNLAE
CCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCHHHEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MIIKTLQGALALVLSACAAGAIAGPVGYGAATTGGGNKTAVNVATFEAVQAAIDNYSGSG
CEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEEEHHHHHHHHHHHCCCCCC
GLVLNYTGQFDFGTIKDVCAQWKLPAKTVQIKNKSDITIKGANGSSANFGVRVVGDAHNV
CEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCCEEEECCCCEE
IVQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIFASLTKCSGAGDASFDGGIDM
EEECEEEEEEECCCCCCEEEECCCCCCCCCEEEEECCEEEEEEHHCCCCCCCCCCCCCCC
KKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
CCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
VYNNYFNNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITW
HHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEE
STPDGSKPYANATNWVSSKVFLESLGYIYTVTPAAQVKAKVIATAGAGKNLAE
CCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCHHHEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3040692; 7773390 [H]