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The map label for this gene is ynhD [H]

Identifier: 21243663

GI number: 21243663

Start: 3440850

End: 3441614

Strand: Direct

Name: ynhD [H]

Synonym: XAC2936

Alternate gene names: 21243663

Gene position: 3440850-3441614 (Clockwise)

Preceding gene: 21243662

Following gene: 21243664

Centisome position: 66.48

GC content: 62.75

Gene sequence:

>765_bases
ATGCTCACAATCAACAACCTCCACGCCAGCATCGCCGGCAAAGACATCCTCAAGGGCCTGTCGCTGGACATCCAGCCCGG
CCAGGTACACGCCATCATGGGTCCCAATGGCGCGGGTAAGTCCACGCTGGGCAATGTACTGGCCGGTCGAGACGGCTATG
AGGTCAGCGCAGGCAGCGTGCAGTTCGACGGCAAGGATCTTCTCGACCTGCCGCCGGAAGAACGCGCCGCCGCTGGCTTG
TTCCTGGCCTTTCAGTACCCGGTGGAAATTCCCGGCGTCAACAACACCTATTTCCTGCGCGCCGCGCTGAACGCGCAGCG
CAAGGCGCGTGGCGAAGACGAGCTGGATTCGATGCAGTTCCTCAAGCTGGTGCGGCAGAAGCTGGCCGTGCTGCATCTGA
AGGACGAGCTGCTGCATCGCGGCGTCAACGAAGGGTTCTCTGGCGGGGAAAAGAAGCGCAACGAGATCTTCCAGCTGGCC
GTGCTCGAGCCCAAGCTCGCCATTCTGGACGAGACCGATTCCGGCCTGGATATCGATGCGCTCAAGAGCGTGGCCGACGG
CGTCAACGCGCTGCGTTCGCCCGAGCGGTCGTTCCTGGTCATCACCCACTATCAGCGCTTGCTCGACTACATCAAGCCGG
ACGTGGTGCATGTGCTGGCCGAGGGCCGCATCGTACAGAGCGGCGGCCCGGAACTGGCGCTGGAACTGGAAAAGCACGGT
TATCACTTCCTGAAAGACCGCGTCGTGCCCGAGGTTGCCGCCTGA

Upstream 100 bases:

>100_bases
GAGCCTCGCGTACCCAAGTCCAGGAGAGGCTTCGCGCCGACCCTCACCCCAACCCCTCTCCCGGTAGGAGAGGGGCTAAA
AGAATCTGATGGAAAATCCC

Downstream 100 bases:

>100_bases
TGAGTGCCCTGCTTGACTCCCTGGCGCGCGGGTTCAGCGGCAGTGATGCACGCCGCGCCGAGCTCGATGCCGCCCTGCAG
ACCGGCCTGCCCGGCCCACG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MLTINNLHASIAGKDILKGLSLDIQPGQVHAIMGPNGAGKSTLGNVLAGRDGYEVSAGSVQFDGKDLLDLPPEERAAAGL
FLAFQYPVEIPGVNNTYFLRAALNAQRKARGEDELDSMQFLKLVRQKLAVLHLKDELLHRGVNEGFSGGEKKRNEIFQLA
VLEPKLAILDETDSGLDIDALKSVADGVNALRSPERSFLVITHYQRLLDYIKPDVVHVLAEGRIVQSGGPELALELEKHG
YHFLKDRVVPEVAA

Sequences:

>Translated_254_residues
MLTINNLHASIAGKDILKGLSLDIQPGQVHAIMGPNGAGKSTLGNVLAGRDGYEVSAGSVQFDGKDLLDLPPEERAAAGL
FLAFQYPVEIPGVNNTYFLRAALNAQRKARGEDELDSMQFLKLVRQKLAVLHLKDELLHRGVNEGFSGGEKKRNEIFQLA
VLEPKLAILDETDSGLDIDALKSVADGVNALRSPERSFLVITHYQRLLDYIKPDVVHVLAEGRIVQSGGPELALELEKHG
YHFLKDRVVPEVAA
>Mature_254_residues
MLTINNLHASIAGKDILKGLSLDIQPGQVHAIMGPNGAGKSTLGNVLAGRDGYEVSAGSVQFDGKDLLDLPPEERAAAGL
FLAFQYPVEIPGVNNTYFLRAALNAQRKARGEDELDSMQFLKLVRQKLAVLHLKDELLHRGVNEGFSGGEKKRNEIFQLA
VLEPKLAILDETDSGLDIDALKSVADGVNALRSPERSFLVITHYQRLLDYIKPDVVHVLAEGRIVQSGGPELALELEKHG
YHFLKDRVVPEVAA

Specific function: Has low ATPase activity. The SufBCD complex acts synergistically with SufE to stimulate the cysteine desulfurase activity of SufS. The SufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May f

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955963, Length=237, Percent_Identity=27.4261603375527, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI9961252, Length=249, Percent_Identity=29.718875502008, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9961250, Length=249, Percent_Identity=29.718875502008, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4505771, Length=249, Percent_Identity=29.718875502008, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI156105685, Length=230, Percent_Identity=28.2608695652174, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI62526033, Length=233, Percent_Identity=28.755364806867, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI46592915, Length=218, Percent_Identity=30.7339449541284, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI46592898, Length=218, Percent_Identity=30.7339449541284, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1787972, Length=247, Percent_Identity=63.1578947368421, Blast_Score=329, Evalue=1e-91,
Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=27.1111111111111, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87081791, Length=233, Percent_Identity=27.8969957081545, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=26.4069264069264, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790467, Length=236, Percent_Identity=29.6610169491525, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=26.7241379310345, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789672, Length=236, Percent_Identity=25.8474576271186, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787029, Length=239, Percent_Identity=24.2677824267782, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788165, Length=233, Percent_Identity=25.3218884120172, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790190, Length=231, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787712, Length=231, Percent_Identity=25.5411255411255, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787500, Length=225, Percent_Identity=29.7777777777778, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789593, Length=239, Percent_Identity=25.9414225941423, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=241, Percent_Identity=31.1203319502075, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538654, Length=242, Percent_Identity=28.9256198347107, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=245, Percent_Identity=27.3469387755102, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=250, Percent_Identity=27.6, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=222, Percent_Identity=30.6306306306306, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=255, Percent_Identity=27.843137254902, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6319856, Length=237, Percent_Identity=27.4261603375527, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24641565, Length=218, Percent_Identity=30.7339449541284, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI85724864, Length=241, Percent_Identity=29.045643153527, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580555, Length=241, Percent_Identity=29.045643153527, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85816269, Length=241, Percent_Identity=29.045643153527, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580553, Length=241, Percent_Identity=29.045643153527, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281363262, Length=234, Percent_Identity=31.6239316239316, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24653245, Length=234, Percent_Identity=31.6239316239316, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076682, Length=247, Percent_Identity=29.5546558704453, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161076684, Length=247, Percent_Identity=29.5546558704453, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581617, Length=247, Percent_Identity=29.5546558704453, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581615, Length=247, Percent_Identity=29.5546558704453, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17136592, Length=254, Percent_Identity=28.3464566929134, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19920532, Length=219, Percent_Identity=30.5936073059361, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580930, Length=219, Percent_Identity=30.5936073059361, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27690; Mature: 27690

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTINNLHASIAGKDILKGLSLDIQPGQVHAIMGPNGAGKSTLGNVLAGRDGYEVSAGSV
CEEECCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEECCCEE
QFDGKDLLDLPPEERAAAGLFLAFQYPVEIPGVNNTYFLRAALNAQRKARGEDELDSMQF
EECCCCCCCCCCHHHHHCEEEEEEECCEECCCCCCCEEEEEECCHHHHCCCCCHHHHHHH
LKLVRQKLAVLHLKDELLHRGVNEGFSGGEKKRNEIFQLAVLEPKLAILDETDSGLDIDA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHEEEEEEECCCEEEEECCCCCCCHHH
LKSVADGVNALRSPERSFLVITHYQRLLDYIKPDVVHVLAEGRIVQSGGPELALELEKHG
HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCHHHHHHHHCCEEEECCCCCEEEEEHHCC
YHFLKDRVVPEVAA
HHHHHHHCCCCCCC
>Mature Secondary Structure
MLTINNLHASIAGKDILKGLSLDIQPGQVHAIMGPNGAGKSTLGNVLAGRDGYEVSAGSV
CEEECCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEECCCEE
QFDGKDLLDLPPEERAAAGLFLAFQYPVEIPGVNNTYFLRAALNAQRKARGEDELDSMQF
EECCCCCCCCCCHHHHHCEEEEEEECCEECCCCCCCEEEEEECCHHHHCCCCCHHHHHHH
LKLVRQKLAVLHLKDELLHRGVNEGFSGGEKKRNEIFQLAVLEPKLAILDETDSGLDIDA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHEEEEEEECCCEEEEECCCCCCCHHH
LKSVADGVNALRSPERSFLVITHYQRLLDYIKPDVVHVLAEGRIVQSGGPELALELEKHG
HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCHHHHHHHHCCEEEECCCCCEEEEEHHCC
YHFLKDRVVPEVAA
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]