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The map label for this gene is yagT [H]

Identifier: 21243622

GI number: 21243622

Start: 3395061

End: 3395729

Strand: Reverse

Name: yagT [H]

Synonym: XAC2895

Alternate gene names: 21243622

Gene position: 3395729-3395061 (Counterclockwise)

Preceding gene: 21243623

Following gene: 21243621

Centisome position: 65.61

GC content: 63.53

Gene sequence:

>669_bases
TTGTTGGAGATGCCAGCCATGAGAGACATCAAGATGACCCGTCGCGAGGTGCTGATCGCGGGGACGGCATCCGCAGCCAG
CGTTGCCGCAACCCAATCGATGACCGCCACCGCCGCCACTGCGATGTCGCAGCGGCCCGCAAGCGAGCCCGCCAATGCAT
CCAGCCAGGTCGGCTTCGAGGTGAACGGCAAACCGGTCACGCTGACGCTGGATAACCGCACCACCTTGCTGGATGCGCTG
CGCGAACATCTGCATCTCACTGGCACCAAGAAGGGCTGCGATCACGGCCAGTGCGGCGCATGTACGGTCATCGTCGACGG
GCAACGCATGAACGCGTGCCTGTCGCTGGCAGTGATGCACGAGGGCGCCAAGGTCACCACCATCGAAGGGCTGGGCACGC
CGGACAAGCTGCACCCCATGCAGGCGGCGTTCGTCAAGCACGATGGCTACCAATGCGGCTACTGCACGCCCGGGCAGATC
TGTTCGGCAGTGGCCGTGCTGGACGAGGTGAAGCGCGGGATCCCCAGCCATGTCACCGAAGACCTCACCGGCAAGCTCAG
ACTCACCACGCCGGAATTGCAGGAACGCATGAGTGGCAATATCTGCCGTTGTGGTGCGTACTCCAACATCGTCGAAGCCA
TCGACGATGTTGCCGGAGGCCGCGCATGA

Upstream 100 bases:

>100_bases
ATCGGGCAATGCACTGCGTCACGCCCGCAGTCGCGGCCGCGCACTCACGCGCTTGTGACCAGCAGCGCTGCACATTGATT
GAGAACTGTAAAAGCCAGCA

Downstream 100 bases:

>100_bases
AAGCCTTTAGCTACGAACGGGCCAGCTCGCCAGCCGATGCCGCCGCCAAGGCCGCGCGCCAGCCCGGTGCCAAGTTCATC
GCAGGCGGGACCAACCTGCT

Product: xanthine dehydrogenase iron-sulfur-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MLEMPAMRDIKMTRREVLIAGTASAASVAATQSMTATAATAMSQRPASEPANASSQVGFEVNGKPVTLTLDNRTTLLDAL
REHLHLTGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMHEGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQI
CSAVAVLDEVKRGIPSHVTEDLTGKLRLTTPELQERMSGNICRCGAYSNIVEAIDDVAGGRA

Sequences:

>Translated_222_residues
MLEMPAMRDIKMTRREVLIAGTASAASVAATQSMTATAATAMSQRPASEPANASSQVGFEVNGKPVTLTLDNRTTLLDAL
REHLHLTGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMHEGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQI
CSAVAVLDEVKRGIPSHVTEDLTGKLRLTTPELQERMSGNICRCGAYSNIVEAIDDVAGGRA
>Mature_222_residues
MLEMPAMRDIKMTRREVLIAGTASAASVAATQSMTATAATAMSQRPASEPANASSQVGFEVNGKPVTLTLDNRTTLLDAL
REHLHLTGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMHEGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQI
CSAVAVLDEVKRGIPSHVTEDLTGKLRLTTPELQERMSGNICRCGAYSNIVEAIDDVAGGRA

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=173, Percent_Identity=38.728323699422, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI71773480, Length=172, Percent_Identity=38.953488372093, Blast_Score=71, Evalue=8e-13,
Organism=Escherichia coli, GI1786480, Length=211, Percent_Identity=61.1374407582938, Blast_Score=265, Evalue=3e-72,
Organism=Escherichia coli, GI1789232, Length=167, Percent_Identity=38.3233532934132, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17540638, Length=171, Percent_Identity=38.0116959064327, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17539860, Length=167, Percent_Identity=35.3293413173653, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI32566215, Length=167, Percent_Identity=35.3293413173653, Blast_Score=94, Evalue=5e-20,
Organism=Drosophila melanogaster, GI17737937, Length=172, Percent_Identity=41.2790697674419, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24647199, Length=168, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24647195, Length=176, Percent_Identity=32.3863636363636, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24647197, Length=176, Percent_Identity=32.3863636363636, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24647201, Length=168, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24647193, Length=150, Percent_Identity=34, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 23427; Mature: 23427

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEMPAMRDIKMTRREVLIAGTASAASVAATQSMTATAATAMSQRPASEPANASSQVGFE
CCCCCCCHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
VNGKPVTLTLDNRTTLLDALREHLHLTGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMH
ECCEEEEEEECCCHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHC
EGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAVLDEVKRGIPSHVTE
CCCEEEEEECCCCCCHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
DLTGKLRLTTPELQERMSGNICRCGAYSNIVEAIDDVAGGRA
HCCCCEEEECHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLEMPAMRDIKMTRREVLIAGTASAASVAATQSMTATAATAMSQRPASEPANASSQVGFE
CCCCCCCHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
VNGKPVTLTLDNRTTLLDALREHLHLTGTKKGCDHGQCGACTVIVDGQRMNACLSLAVMH
ECCEEEEEEECCCHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHC
EGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAVLDEVKRGIPSHVTE
CCCEEEEEECCCCCCHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
DLTGKLRLTTPELQERMSGNICRCGAYSNIVEAIDDVAGGRA
HCCCCEEEECHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]