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The map label for this gene is ycdC [C]

Identifier: 21243568

GI number: 21243568

Start: 3330683

End: 3331357

Strand: Reverse

Name: ycdC [C]

Synonym: XAC2841

Alternate gene names: 21243568

Gene position: 3331357-3330683 (Counterclockwise)

Preceding gene: 21243569

Following gene: 21243567

Centisome position: 64.37

GC content: 66.37

Gene sequence:

>675_bases
GTGGATGATGACGCGCCGCCCATTGCACGTGCGCCACACGACAAGCGTGGCGCCATCCTGGCGGCGGCACGCGTGCTGTT
TCAACAGCACGGCTTCGACAGGACCAGCATGGACACCATCGCCGAGCGTGCGATGGTGTCCAAGGCCACGGTGTATGCGC
ATTTCGCGTCCAAGGAGGTGCTGTTCCGCACCACCCTGGAAGCGCTGGCGCAGGCCTCGCCCAATCGCTGGACGGCCTTG
CTGGCGCTGCAGGGGCCGTTGGAGCAACGCCTGGCTGCGGTGGCCGATGCAGTGCTGCGCGTGTCTGCCAGCAGCATGCG
GGAGGATGCCGCGTATGGCCTGGTACGCCCGCCACTGCTGCCTAGCCAGATGCGCGAGGAAATGTGGACGCTGTGCTTCG
AGCGCTACGACACCATGATGCGCACGTTGTTGGCGCGCGAGGTGCAACGCGGGGCATTGGTGATCGACAACGTGCCCGAT
GCATCGGTGCATTTCTTTGGGTTGATGACCGGGCGGCCGGCCACCGCCGCTGCGCGCGACGATGCGCCAGGTGCGCGGTC
GGTGCAGCTGGATGCGTATGTCAGCGGCGCGGTGGCGTTGTTCCTGCGGGCGTATCGACCGGACGCGGTGGTGCCAGGGG
GAGATAGCAAGCGCGAATTGCCCAGCGAATTCTAG

Upstream 100 bases:

>100_bases
CGCTTCACCAACCTGGTGACGTTCTACAAGGCCATGGGCGGTGGCTGGCTGCAAACCGCCGCGCCCACTGCCGTCGCGAG
CCCAGCAGCGGAGCCGCCGC

Downstream 100 bases:

>100_bases
GCCGGCCGGCGTGCGATGCAGCAGTCGTGCGTGCCCAGGTCATGGCGGTGGGCCAGCGCGCTACAGTGCCAAGACTAAAA
ATGAAGGAGCGCTGCAATGA

Product: transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; TetR-Type Transcriptional Regulator; TetR Family Regulatory Protein

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDDDAPPIARAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTLEALAQASPNRWTAL
LALQGPLEQRLAAVADAVLRVSASSMREDAAYGLVRPPLLPSQMREEMWTLCFERYDTMMRTLLAREVQRGALVIDNVPD
ASVHFFGLMTGRPATAAARDDAPGARSVQLDAYVSGAVALFLRAYRPDAVVPGGDSKRELPSEF

Sequences:

>Translated_224_residues
MDDDAPPIARAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTLEALAQASPNRWTAL
LALQGPLEQRLAAVADAVLRVSASSMREDAAYGLVRPPLLPSQMREEMWTLCFERYDTMMRTLLAREVQRGALVIDNVPD
ASVHFFGLMTGRPATAAARDDAPGARSVQLDAYVSGAVALFLRAYRPDAVVPGGDSKRELPSEF
>Mature_224_residues
MDDDAPPIARAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEVLFRTTLEALAQASPNRWTAL
LALQGPLEQRLAAVADAVLRVSASSMREDAAYGLVRPPLLPSQMREEMWTLCFERYDTMMRTLLAREVQRGALVIDNVPD
ASVHFFGLMTGRPATAAARDDAPGARSVQLDAYVSGAVALFLRAYRPDAVVPGGDSKRELPSEF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24500; Mature: 24500

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDDAPPIARAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHH
LFRTTLEALAQASPNRWTALLALQGPLEQRLAAVADAVLRVSASSMREDAAYGLVRPPLL
HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PSQMREEMWTLCFERYDTMMRTLLAREVQRGALVIDNVPDASVHFFGLMTGRPATAAARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCCCCCCC
DAPGARSVQLDAYVSGAVALFLRAYRPDAVVPGGDSKRELPSEF
CCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDDAPPIARAPHDKRGAILAAARVLFQQHGFDRTSMDTIAERAMVSKATVYAHFASKEV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHH
LFRTTLEALAQASPNRWTALLALQGPLEQRLAAVADAVLRVSASSMREDAAYGLVRPPLL
HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PSQMREEMWTLCFERYDTMMRTLLAREVQRGALVIDNVPDASVHFFGLMTGRPATAAARD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCCCCCCC
DAPGARSVQLDAYVSGAVALFLRAYRPDAVVPGGDSKRELPSEF
CCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA