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The map label for this gene is ydaM [H]

Identifier: 21243537

GI number: 21243537

Start: 3295120

End: 3296190

Strand: Reverse

Name: ydaM [H]

Synonym: XAC2810

Alternate gene names: 21243537

Gene position: 3296190-3295120 (Counterclockwise)

Preceding gene: 21243538

Following gene: 21243534

Centisome position: 63.69

GC content: 66.67

Gene sequence:

>1071_bases
GTGATCAAACCGGAATTGCCGAGCAACGAGGCCGAGCGGCTGGCCGCGCTGCGCCAGTACGACGTGCTGGATTCGCCGGC
CGAACGGGCATTCGACGACCTGACCATGATTGCCTCCACGCTGTGCGAGACGCAGATGGCGGCGGTGGTGCTGGTGGACG
AAGACCGGCAGTGGTTCAAGTCTGCGCACGGTGCGCCGCGCAGCGAAGCACCGCGCGATATCTCGTTCTGCGCGCACGCG
ATCCTGCGCCCGGACGAAGTGCTGATGGTGGACGACACCTTGCTGGACCCACGCTTCCACGATAACCCGATGGTGGTCGG
CAGCGGTGGGGTGCGCTTCTACGCCGGCGCGCCGCTGGTGACCAGCCAGGGCATGGCGCTGGGTTCGCTGTGCGTGTTCG
ACCAGGCCCCGGCGCATCTGCGCGAAGACCAGCGCGAGGCCTTGCAGGCATTGTCGCGGCAGGCCTCGCAGCTGCTTGAG
TTGCGGCTGGCCGGCCGGCAGTTGCGCCAGCAGTTGCACGAGCGCGAATGGTACGAACAGCAGATGGCCGGCTATTACGC
GCAGATGGATGCGTTGCACGCCGACCTGGTCGAACAGACCCGCACCGATCCCTTGACCGGCCTGCCCAACCGGCGTGCGT
TCGCGGTGGCATTGGCGGCGGCCACCGAACAGACGCGCGCGGTGGGCCAACCGCTGTCGGTCGCGCTGCTGGACGTGGAC
CATTTCAAGACCGTCAACGATGTGCATGGGCACGATCAGGGCGATGCCGTGCTGCGCGAACTGTCTACCCTGCTGCGTGC
GCATATGGCCGGTGCCGGCACCATCGCCCGTTATGGCGGCGAGGAATTCGTGTTGCTGCTGCCCAATGCGAATCTGCTGC
AGGCACGCGTGCAATGCGAATACCTGCGCCAGAGCGTGGCGGCGATGACGATCGCGCTTCCGGTGACGGTGAGTATCGGT
GTGGCGACCTTGTACCCGCAGGAAAGCGTGGAGGCGGTGATCAAGCGCGCCGACCAGGCCCTGTATGCGGCCAAGCGCGG
CGGGCGCGATCAGGTGGTTGCGCTGGAGTAG

Upstream 100 bases:

>100_bases
GCCAGGGCGGCGCTTGCGGTGCTGCAGAGTGGGGGGCCGCCCGATGGTGGCACTGGCTGGGCTCCGGCATACTTTCACAG
ATAACAGCCAGGGGGCGGCA

Downstream 100 bases:

>100_bases
GGTGGGCGTGGTTGCGCGCCTTCCGATGCAGGTGGCCTGGCAAGCGCATGGAACGTCGATTGCTGCGCGCCGGGATGCTG
ACGCCGCGCGATGCCGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MIKPELPSNEAERLAALRQYDVLDSPAERAFDDLTMIASTLCETQMAAVVLVDEDRQWFKSAHGAPRSEAPRDISFCAHA
ILRPDEVLMVDDTLLDPRFHDNPMVVGSGGVRFYAGAPLVTSQGMALGSLCVFDQAPAHLREDQREALQALSRQASQLLE
LRLAGRQLRQQLHEREWYEQQMAGYYAQMDALHADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVD
HFKTVNDVHGHDQGDAVLRELSTLLRAHMAGAGTIARYGGEEFVLLLPNANLLQARVQCEYLRQSVAAMTIALPVTVSIG
VATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE

Sequences:

>Translated_356_residues
MIKPELPSNEAERLAALRQYDVLDSPAERAFDDLTMIASTLCETQMAAVVLVDEDRQWFKSAHGAPRSEAPRDISFCAHA
ILRPDEVLMVDDTLLDPRFHDNPMVVGSGGVRFYAGAPLVTSQGMALGSLCVFDQAPAHLREDQREALQALSRQASQLLE
LRLAGRQLRQQLHEREWYEQQMAGYYAQMDALHADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVD
HFKTVNDVHGHDQGDAVLRELSTLLRAHMAGAGTIARYGGEEFVLLLPNANLLQARVQCEYLRQSVAAMTIALPVTVSIG
VATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE
>Mature_356_residues
MIKPELPSNEAERLAALRQYDVLDSPAERAFDDLTMIASTLCETQMAAVVLVDEDRQWFKSAHGAPRSEAPRDISFCAHA
ILRPDEVLMVDDTLLDPRFHDNPMVVGSGGVRFYAGAPLVTSQGMALGSLCVFDQAPAHLREDQREALQALSRQASQLLE
LRLAGRQLRQQLHEREWYEQQMAGYYAQMDALHADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVD
HFKTVNDVHGHDQGDAVLRELSTLLRAHMAGAGTIARYGGEEFVLLLPNANLLQARVQCEYLRQSVAAMTIALPVTVSIG
VATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=42.4418604651163, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787816, Length=243, Percent_Identity=30.0411522633745, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI145693134, Length=183, Percent_Identity=32.2404371584699, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=34.375, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=35.1851851851852, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=36.0248447204969, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081977, Length=284, Percent_Identity=26.056338028169, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787541, Length=161, Percent_Identity=34.7826086956522, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=31.8435754189944, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=31.25, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=32.4503311258278, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=29.559748427673, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=187, Percent_Identity=32.0855614973262, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 39117; Mature: 39117

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKPELPSNEAERLAALRQYDVLDSPAERAFDDLTMIASTLCETQMAAVVLVDEDRQWFK
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHH
SAHGAPRSEAPRDISFCAHAILRPDEVLMVDDTLLDPRFHDNPMVVGSGGVRFYAGAPLV
HHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEECCCEE
TSQGMALGSLCVFDQAPAHLREDQREALQALSRQASQLLELRLAGRQLRQQLHEREWYEQ
ECCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMAGYYAQMDALHADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHH
HFKTVNDVHGHDQGDAVLRELSTLLRAHMAGAGTIARYGGEEFVLLLPNANLLQARVQCE
HHCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCHHHHHHHHHH
YLRQSVAAMTIALPVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE
HHHHHHHHHHHHHHHEEEECEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
>Mature Secondary Structure
MIKPELPSNEAERLAALRQYDVLDSPAERAFDDLTMIASTLCETQMAAVVLVDEDRQWFK
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHH
SAHGAPRSEAPRDISFCAHAILRPDEVLMVDDTLLDPRFHDNPMVVGSGGVRFYAGAPLV
HHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEECCCEE
TSQGMALGSLCVFDQAPAHLREDQREALQALSRQASQLLELRLAGRQLRQQLHEREWYEQ
ECCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMAGYYAQMDALHADLVEQTRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHH
HFKTVNDVHGHDQGDAVLRELSTLLRAHMAGAGTIARYGGEEFVLLLPNANLLQARVQCE
HHCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCHHHHHHHHHH
YLRQSVAAMTIALPVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE
HHHHHHHHHHHHHHHEEEECEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]