| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yjgR [H]
Identifier: 21243457
GI number: 21243457
Start: 3192399
End: 3193904
Strand: Direct
Name: yjgR [H]
Synonym: XAC2730
Alternate gene names: 21243457
Gene position: 3192399-3193904 (Clockwise)
Preceding gene: 21243455
Following gene: 77748670
Centisome position: 61.68
GC content: 66.2
Gene sequence:
>1506_bases ATGGCCTCGTTCCTGCTCGGCAAAGGCGTCACCGACGACATCCCGGTTGTGCTGGAAGCCCGCTTCGGCAATCGCCACGG GCTGGTGGCCGGCGCCACCGGCACCGGCAAGACCGTGACCCTGATGACCCTGGCCGAAGGCTTCTCGCGGCTGGGCGTTC CGGTGTTCCTGGCCGATGTAAAAGGCGATGTCGCCGGCCTGGCCGTGGCCGGCGACGGGGCAGCCGGCGTGCTGCAGCGC GCCAACGATACGGGCATGACCGACTACGCCCCAGCGGCTAACCCGGTGGTGTTCTGGGACCTGTATGGCCAGCTCGGGCA TCCGGTACGTACCACCGTCAGCGAGATGGGCCCCACCCTGCTCGCCAGGATTCTGGAGCTCAACGACACCCAGTCCGGCG TACTCGACATCGTGTTCAAGCTGGCCGACGACCGCGGCTTGCTGTTGCTGGACCTGGACGACCTGCGTGCACTGCTCGCG CTGGTGGTCCAAGAGCGCAAGGAGCTCTCCACCAGTTACGGACTGGTGTCCAGCCAATCGGTGGCCGCCATCCAGCGCGC CTTGCTGCGCTTGTCGCAGGACGGCGGCGAACAGTTCTTCGGTGAACCCGCGCTGGAGCTGGCCGAACTGATGCGCGTCA CACCGGATGGCCGTGGCGTGATCGGCATCCTGGCTGCCAACCAATTGGTGCTCAAGCCGAAGCTGTATTCCACCTTCCTG CTGTGGCTGCTGTCGGAACTATTCGAACGCTTGCCCGAAGTGGGCGACCTGGAACAACCCACACTGGTGTTCGTCTTCGA CGAGGCGCACCTGCTGTTCGACGATGCGCCGGCGGCGCTGGTGCAGCGCATCGAACAGGTGGTGCGCCTGATCCGTTCCA AGGGCGTGGGCGTGTATTTCTGCTCGCAGTTTCCCGATGACATTCCCGACAATATCCTCGGCCAGCTCGGCAATCGCGTG CAGCACGCGCTGCGCGCCTACACGCCGCGCGACCAGAAGGCGGTGAAGACCGCCGCGCAGACCTTCGTCGGCAATCCCAA GCTCGATGTCGCCACCGCCATCTCCAGCCTGGGTACCGGCGAGGCGCTGGTATCGCCGCTGCAGGGCAAGGGCGTACCGG CGCCGGTGCAGCAGACATTGATCGCCCCGCCGCGTTGCCGTATGGGCGCCATCAGCGAGACCGAACGCACGCAGGTGCGC GCCACCAGCCCGGTCGGCACCCGCTACGACACCGCGATCAATCGCCAATCGGCGGCCGAACTGCTGGCGCGCCGTGTCGA ACAGGTGGCCGAACACAACGCAGCACCACCTGCCCGCACTCGCGCAGACGACGACGCGCACGACAGCGGCTTCGGTCAGG CGGTCAAGGACGCGGTCTTCGGCACCAACCGCCGCCAGGGCATGCTCGAAGCGATGGCCAAGCAGACCTCGCGCACGGTA GGCAACAAGATCGGGCAGCAGATCGTGCGCGGCATCTTCGGTAGCATTTTTGGTGGGAAGCGTTGA
Upstream 100 bases:
>100_bases GTTCGACCCAGCCTGCCTGCCAGAATCCGCTGAGTTGACGGATGGCGTTGCCCGCCGGGATTGCCCGCTAGAATCGGCCC TTTCCCACCGGATCAGCGCA
Downstream 100 bases:
>100_bases TCGGCTTGATCATCGCCGCCGACACGTCTCGATGACACCGTCGCCCTGAAGGGCTATCGCGCGTTGGCGTGGATGGACTC CAACACACCATGCAACTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MASFLLGKGVTDDIPVVLEARFGNRHGLVAGATGTGKTVTLMTLAEGFSRLGVPVFLADVKGDVAGLAVAGDGAAGVLQR ANDTGMTDYAPAANPVVFWDLYGQLGHPVRTTVSEMGPTLLARILELNDTQSGVLDIVFKLADDRGLLLLDLDDLRALLA LVVQERKELSTSYGLVSSQSVAAIQRALLRLSQDGGEQFFGEPALELAELMRVTPDGRGVIGILAANQLVLKPKLYSTFL LWLLSELFERLPEVGDLEQPTLVFVFDEAHLLFDDAPAALVQRIEQVVRLIRSKGVGVYFCSQFPDDIPDNILGQLGNRV QHALRAYTPRDQKAVKTAAQTFVGNPKLDVATAISSLGTGEALVSPLQGKGVPAPVQQTLIAPPRCRMGAISETERTQVR ATSPVGTRYDTAINRQSAAELLARRVEQVAEHNAAPPARTRADDDAHDSGFGQAVKDAVFGTNRRQGMLEAMAKQTSRTV GNKIGQQIVRGIFGSIFGGKR
Sequences:
>Translated_501_residues MASFLLGKGVTDDIPVVLEARFGNRHGLVAGATGTGKTVTLMTLAEGFSRLGVPVFLADVKGDVAGLAVAGDGAAGVLQR ANDTGMTDYAPAANPVVFWDLYGQLGHPVRTTVSEMGPTLLARILELNDTQSGVLDIVFKLADDRGLLLLDLDDLRALLA LVVQERKELSTSYGLVSSQSVAAIQRALLRLSQDGGEQFFGEPALELAELMRVTPDGRGVIGILAANQLVLKPKLYSTFL LWLLSELFERLPEVGDLEQPTLVFVFDEAHLLFDDAPAALVQRIEQVVRLIRSKGVGVYFCSQFPDDIPDNILGQLGNRV QHALRAYTPRDQKAVKTAAQTFVGNPKLDVATAISSLGTGEALVSPLQGKGVPAPVQQTLIAPPRCRMGAISETERTQVR ATSPVGTRYDTAINRQSAAELLARRVEQVAEHNAAPPARTRADDDAHDSGFGQAVKDAVFGTNRRQGMLEAMAKQTSRTV GNKIGQQIVRGIFGSIFGGKR >Mature_500_residues ASFLLGKGVTDDIPVVLEARFGNRHGLVAGATGTGKTVTLMTLAEGFSRLGVPVFLADVKGDVAGLAVAGDGAAGVLQRA NDTGMTDYAPAANPVVFWDLYGQLGHPVRTTVSEMGPTLLARILELNDTQSGVLDIVFKLADDRGLLLLDLDDLRALLAL VVQERKELSTSYGLVSSQSVAAIQRALLRLSQDGGEQFFGEPALELAELMRVTPDGRGVIGILAANQLVLKPKLYSTFLL WLLSELFERLPEVGDLEQPTLVFVFDEAHLLFDDAPAALVQRIEQVVRLIRSKGVGVYFCSQFPDDIPDNILGQLGNRVQ HALRAYTPRDQKAVKTAAQTFVGNPKLDVATAISSLGTGEALVSPLQGKGVPAPVQQTLIAPPRCRMGAISETERTQVRA TSPVGTRYDTAINRQSAAELLARRVEQVAEHNAAPPARTRADDDAHDSGFGQAVKDAVFGTNRRQGMLEAMAKQTSRTVG NKIGQQIVRGIFGSIFGGKR
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yjiB [H]
Homologues:
Organism=Escherichia coli, GI1790714, Length=496, Percent_Identity=54.0322580645161, Blast_Score=512, Evalue=1e-146,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 [H]
Pfam domain/function: PF05872 DUF853 [H]
EC number: NA
Molecular weight: Translated: 53638; Mature: 53507
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASFLLGKGVTDDIPVVLEARFGNRHGLVAGATGTGKTVTLMTLAEGFSRLGVPVFLADV CCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEHHHHHHHHHHCCCEEEEEEC KGDVAGLAVAGDGAAGVLQRANDTGMTDYAPAANPVVFWDLYGQLGHPVRTTVSEMGPTL CCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHCCHHHHHHHHHCHHH LARILELNDTQSGVLDIVFKLADDRGLLLLDLDDLRALLALVVQERKELSTSYGLVSSQS HHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHH VAAIQRALLRLSQDGGEQFFGEPALELAELMRVTPDGRGVIGILAANQLVLKPKLYSTFL HHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEECHHHHHHHH LWLLSELFERLPEVGDLEQPTLVFVFDEAHLLFDDAPAALVQRIEQVVRLIRSKGVGVYF HHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEE CSQFPDDIPDNILGQLGNRVQHALRAYTPRDQKAVKTAAQTFVGNPKLDVATAISSLGTG CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC EALVSPLQGKGVPAPVQQTLIAPPRCRMGAISETERTQVRATSPVGTRYDTAINRQSAAE HHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHEEECCCCCCCHHHHHHHHHHHH LLARRVEQVAEHNAAPPARTRADDDAHDSGFGQAVKDAVFGTNRRQGMLEAMAKQTSRTV HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH GNKIGQQIVRGIFGSIFGGKR HHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ASFLLGKGVTDDIPVVLEARFGNRHGLVAGATGTGKTVTLMTLAEGFSRLGVPVFLADV CCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEHHHHHHHHHHCCCEEEEEEC KGDVAGLAVAGDGAAGVLQRANDTGMTDYAPAANPVVFWDLYGQLGHPVRTTVSEMGPTL CCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHCCHHHHHHHHHCHHH LARILELNDTQSGVLDIVFKLADDRGLLLLDLDDLRALLALVVQERKELSTSYGLVSSQS HHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHH VAAIQRALLRLSQDGGEQFFGEPALELAELMRVTPDGRGVIGILAANQLVLKPKLYSTFL HHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEECHHHHHHHH LWLLSELFERLPEVGDLEQPTLVFVFDEAHLLFDDAPAALVQRIEQVVRLIRSKGVGVYF HHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEE CSQFPDDIPDNILGQLGNRVQHALRAYTPRDQKAVKTAAQTFVGNPKLDVATAISSLGTG CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC EALVSPLQGKGVPAPVQQTLIAPPRCRMGAISETERTQVRATSPVGTRYDTAINRQSAAE HHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHEEECCCCCCCHHHHHHHHHHHH LLARRVEQVAEHNAAPPARTRADDDAHDSGFGQAVKDAVFGTNRRQGMLEAMAKQTSRTV HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH GNKIGQQIVRGIFGSIFGGKR HHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]