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The map label for this gene is nuoD

Identifier: 21243429

GI number: 21243429

Start: 3162397

End: 3163704

Strand: Reverse

Name: nuoD

Synonym: XAC2701

Alternate gene names: 21243429

Gene position: 3163704-3162397 (Counterclockwise)

Preceding gene: 21243430

Following gene: 21243428

Centisome position: 61.13

GC content: 60.86

Gene sequence:

>1308_bases
GTGAGTGAGTTCCGCCAGGCAACCGATGCCTTCGCGAGCAATCCTGTCGAAAGCAAGCAGGAAATCCGCAATTACACGAT
GAACTTCGGCCCGCAGCATCCTGCGGCGCACGGCGTGTTGCGTTTGATCCTGGAAATGGACGGCGAGACCGTGGTGCGTG
CCGATCCGCATATCGGTCTGCTGCACCGTGGCACCGAGAAGCTGGCCGAGTCCAAGCCGTTCAACCAGTCGGTTCCGTAC
ATGGATCGTCTGGATTACGTCTCGATGATGTGCAACGAGCACGCCTACGTGCGCGCGATCGAATCCCTGATGGGGATCCA
AGCGCCCGAGCGTGCGCAGTACATCCGCACCATGTTCGACGAGATCACCCGCATCAAGAACCACTTGATGTGGGTCGGTT
CCAATGCGCTCGATCTGGGGGCGATGGCGGTGATGCTGTATGCATTCCGCGAGCGCGAAGAACTGATGGACGTCTACGAG
GCGGTCAGTGGCGCGCGCATGCACGCTGCCTACTACCGTCCCGGCGGCGTCTATCGCGATCTGCCCGATCGCATGCCGCA
GTACAAGGAGTCGCGTTGGCACAAGGGCGGGGCGCTGAAGAAGCGCAATGCCGGTCGCGAAGGCACCATGCTGGACTTCC
TGGAGGAGTTCACCAATACCTTCCCGGCACGCGTGGACGAATACGAAACCCTGCTGACCGATAACCGCATCTGGAAGCAG
CGTACCGTCGACGTCGGCATCATCAGCCCGGATCTGGCACGCGCCTGGGGCATGACCGGTCCGATGCTGCGTGGTTCGGG
TATTGAGTGGGATCTGCGCAAGAAGCAGCCCTACGCCAAGTACGACGCGGTGGATTTCGATATCCCGGTCGGCACCAATG
GCGACTGCTATGACCGCTACCTGGTGCGTGTGGCCGAGATGCGCGAATCCAACCGCATCATCAAGCAGTGCGTGAAGTGG
CTGAAGGCCAACCCCGGCCCGGTCATGGTCACGAATTTCAAGGTCGCCCCGCCCAGCCGCGAAGGGATGAAGGACGACAT
GGAAGCGCTGATCCATCACTTCAAGCTGTTCAGTGAAGGCTACTGCGTACCGGCCGGCGAAACCTATAGTGCGGTCGAAG
CGCCCAAGGGCGAGTTCGGTTGCTACCTGATGTCAGACGGCGCCAACAAGCCGTTCCGCGTGCACCTGCGCGCGCCGGGC
TTTGCGCATCTGTCGTCGATGGACGCAGTGGTGCGAGGCTATTTGCTGGCCGACGTCGTGGCGATGATCGGTACTTACGA
TTTGGTTTTCGGTGAGGTTGACCGATGA

Upstream 100 bases:

>100_bases
TGACCTCGGTCGAGCCGCGCGTCGGCGTGCCGCGCGTCATTCGCGACGATGCCCGTTATGAGACTGCCGCTGGTGAAGTG
GGCAAGTCGGAGACTGCCAA

Downstream 100 bases:

>100_bases
AGGCGACGGGTAATTTCGAAGCGGCGCGCGACGTCGATCCGCAGGTGGTGCTGAGCGACAAGACGCGCGCGCACATCGAT
CACTGGCTGACCAAGTTCCC

Product: NADH dehydrogenase subunit D

Products: NA

Alternate protein names: NADH dehydrogenase I subunit D; NDH-1 subunit D

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSEFRQATDAFASNPVESKQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY
MDRLDYVSMMCNEHAYVRAIESLMGIQAPERAQYIRTMFDEITRIKNHLMWVGSNALDLGAMAVMLYAFREREELMDVYE
AVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGALKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQ
RTVDVGIISPDLARAWGMTGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW
LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLMSDGANKPFRVHLRAPG
FAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR

Sequences:

>Translated_435_residues
MSEFRQATDAFASNPVESKQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPY
MDRLDYVSMMCNEHAYVRAIESLMGIQAPERAQYIRTMFDEITRIKNHLMWVGSNALDLGAMAVMLYAFREREELMDVYE
AVSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGALKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQ
RTVDVGIISPDLARAWGMTGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKW
LKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLMSDGANKPFRVHLRAPG
FAHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR
>Mature_434_residues
SEFRQATDAFASNPVESKQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSVPYM
DRLDYVSMMCNEHAYVRAIESLMGIQAPERAQYIRTMFDEITRIKNHLMWVGSNALDLGAMAVMLYAFREREELMDVYEA
VSGARMHAAYYRPGGVYRDLPDRMPQYKESRWHKGGALKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQR
TVDVGIISPDLARAWGMTGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRYLVRVAEMRESNRIIKQCVKWL
KANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLMSDGANKPFRVHLRAPGF
AHLSSMDAVVRGYLLADVVAMIGTYDLVFGEVDR

Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat

COG id: COG0649

COG function: function code C; NADH:ubiquinone oxidoreductase 49 kD subunit 7

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 49 kDa subunit family

Homologues:

Organism=Homo sapiens, GI4758786, Length=414, Percent_Identity=57.2463768115942, Blast_Score=489, Evalue=1e-138,
Organism=Homo sapiens, GI260898743, Length=408, Percent_Identity=56.3725490196078, Blast_Score=473, Evalue=1e-133,
Organism=Escherichia coli, GI145693162, Length=410, Percent_Identity=38.2926829268293, Blast_Score=308, Evalue=4e-85,
Organism=Escherichia coli, GI1789076, Length=439, Percent_Identity=27.1070615034169, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788832, Length=407, Percent_Identity=26.5356265356265, Blast_Score=118, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI17555284, Length=431, Percent_Identity=52.6682134570766, Blast_Score=469, Evalue=1e-132,
Organism=Caenorhabditis elegans, GI17568379, Length=419, Percent_Identity=52.5059665871122, Blast_Score=467, Evalue=1e-132,
Organism=Drosophila melanogaster, GI24638644, Length=422, Percent_Identity=58.0568720379147, Blast_Score=513, Evalue=1e-146,
Organism=Drosophila melanogaster, GI221459469, Length=414, Percent_Identity=53.8647342995169, Blast_Score=462, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NUOD_XANAC (Q8PJ43)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_643011.1
- HSSP:   Q56220
- ProteinModelPortal:   Q8PJ43
- SMR:   Q8PJ43
- GeneID:   1156772
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC2701
- NMPDR:   fig|190486.1.peg.2655
- HOGENOM:   HBG459705
- OMA:   MADVITI
- ProtClustDB:   PRK06075
- BioCyc:   XAXO190486:XAC2701-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01358
- InterPro:   IPR010219
- InterPro:   IPR001135
- InterPro:   IPR014029
- InterPro:   IPR022885
- TIGRFAMs:   TIGR01962

Pfam domain/function: PF00346 Complex1_49kDa

EC number: =1.6.99.5

Molecular weight: Translated: 49445; Mature: 49314

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS00535 COMPLEX1_49K

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFRQATDAFASNPVESKQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGL
CCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCH
LHRGTEKLAESKPFNQSVPYMDRLDYVSMMCNEHAYVRAIESLMGIQAPERAQYIRTMFD
HHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
EITRIKNHLMWVGSNALDLGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRD
HHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCCC
LPDRMPQYKESRWHKGGALKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQ
CHHHCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
RTVDVGIISPDLARAWGMTGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRY
HCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHH
LVRVAEMRESNRIIKQCVKWLKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
YCVPAGETYSAVEAPKGEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVV
CCCCCCCCCHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
AMIGTYDLVFGEVDR
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEFRQATDAFASNPVESKQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGL
CHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCH
LHRGTEKLAESKPFNQSVPYMDRLDYVSMMCNEHAYVRAIESLMGIQAPERAQYIRTMFD
HHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
EITRIKNHLMWVGSNALDLGAMAVMLYAFREREELMDVYEAVSGARMHAAYYRPGGVYRD
HHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCCC
LPDRMPQYKESRWHKGGALKKRNAGREGTMLDFLEEFTNTFPARVDEYETLLTDNRIWKQ
CHHHCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
RTVDVGIISPDLARAWGMTGPMLRGSGIEWDLRKKQPYAKYDAVDFDIPVGTNGDCYDRY
HCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHH
LVRVAEMRESNRIIKQCVKWLKANPGPVMVTNFKVAPPSREGMKDDMEALIHHFKLFSEG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
YCVPAGETYSAVEAPKGEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVVRGYLLADVV
CCCCCCCCCHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
AMIGTYDLVFGEVDR
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12024217