| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is virB4 [H]
Identifier: 21243345
GI number: 21243345
Start: 3079127
End: 3081580
Strand: Reverse
Name: virB4 [H]
Synonym: XAC2614
Alternate gene names: 21243345
Gene position: 3081580-3079127 (Counterclockwise)
Preceding gene: 21243346
Following gene: 21243344
Centisome position: 59.54
GC content: 57.5
Gene sequence:
>2454_bases ATGTTCAGCCCAGACAGTCCGATCAGCGAGTTTGTTTCCATCTCGACGCATGTTGCGCCGTCCGTCGTCAAGACGACCGC CGGCGACTACCTGTTGATCTGGCATCTGGGCGGCTTGCCGTTCGTGGGGCGAGACGAATTCGAGCTCGAACAGCGGCACA ACACGTTCAACCGTCTTCTGCAGACTCTGCGCGCCCCGGATTTCGCCAACGTTGCATTCTGGGTCCACGATGTACGGCGT CGGCGCAGAATCGGTGCAGGCGGACGTTTCAAGCAGGCATTCAATCAAACTCTGTCTGACGAATATTACACAGCGCTTTC ATCGCAAAAGATCATGCAGAACGAGCTGTATTTCAGCATGATTTACAGGCCGGTAGTCACGGGACGTCGCTTGGTGGAGA AATCCGCGAACCCGGACAAGATTCGCGCCGAGGAAGAACAGGCTGTCGCGAAAGTTGTCGAACTGGCTACTAATGTCGAA GCCGTGCTCAAGGATTATGCGCCGTACCGTCTCGGTATGTACGAGGCAAAGAACGGCCTGGTTTTCTCCGAGACCTTGGA GTTTCTGGGCTACTTGTTGAACCGAATCGATGAGCCTGTGCCGGTCTTGCCAGCTCCGGTGCCCGCGTATTTGCCCGTCA GTAAGCACATGTTCGCCAACAAGACCGGCGATTTCGTCATTCGTACTCCAGACGGAATCAATCACTTTGGCGCCATCTTG AATATCAAGGAATATGCGGATGGAACCTATCCGGGCATTCTGAATGGCCTGAAGTACCTGGATTCTGAATACGTCATGAC CCACTCGTTCAGCCCGGTCGGCCGACACGATGCGCTGAAGGTGTTGGAACGCACCAAGGGGATGATGGTTTCTTCAGGCG ACAAATCGTCGACCCAGATCCGCGATCTCGATGTCGCGATGGACGATGTTGCCTCGGGAAACTTCGTGCTCGGCGAATAC CATTTCACATTGGCGGTCTATGCCGACAGCCAGGAGAAGCTGGCTAGGCAGATCGCAACCACCCGAGCCGAATTGTCCAA TGCCGGCTTCGTCTCGGCCAAGGAAGATCTTGCGATCGCCTCGTCGTTTTATTCGCAGCTGCCAGGTAACTGGCGCTTCC GTACGCGCATCGCCAACCTGAGCTCGCTGAACTTCCTTGGCTTGTCGCCGCTGCACAATTTTGCCCAGGGCAAGCAGCAC AACAATCCATGGGGTGACTGCGTCACCACCCTGCAGACAACCAATGGGCAGCCGTACTACTTCAACTTCCATGCGACGCA TCCGTCCGAGAACTCATTGGGAGAGAAGGCCATCGGCAATACGATGGTGATCGGCAAGTCGGGTACCGGTAAGACGGCGC TGATCAACTTCCTGTTGAGTCAGGTGCAGAAGTTCGACCCGATTCCGACCATCTTCTTCTTCGACAAGGACCGCGGCGCG GAGATCTTCGTGCGCGCGTGCGGTGGCAACTACCTGGCGCTGGAAAATGGGTCTCCGACTGGCTTCAACCCTTTCCAATG CGAGCGCAATGAAGCCAACACCCAATTCCTGGCCGAGTTGATCAAGGTGCTGGGCGGCAAGGCCGAATACAGCGCCCGTG AGGAAGAGGACATCTATCGCGCGGTGGAAGGCATGCTGGACACGCCGATGCACCTGCGCAGCATGAGCAATTTCCGCAAG AGTCTGCCCAACATGGGCGACGACGGTCTGTATGCGCGTCTGCGCCGCTGGACCGCTGGCAATTCGCTCGGTTGGGTGTT CGACAATCCGGTGGACACGATCGACCTGACGCGGGCGTCGATCATCGGGTTCGACTACACCGACGTGATCGACAACGCTG AAGTGCGCGTGCCGGTGATCAACTACCTGCTGCATCGCCTGGAAGCGCTGATCGACGGCCGCCCGCTGATCTACGTGATG GACGAATTCTGGAAGATCCTGGACGGCAAGGGTGGCCTGAAGGAATTTGCCAAGAACAAACAGAAGACCATCCGTAAGCA GAATGGCTTAGGGATTTTCGCCACACAGAGCCCCGAAGACGCGCTGGCCAGTGACATTGCCGCTGCATTGATCGAGCAGA CGGCCACCATGATCCTGCTGCCGAACCCGAATGCCAGCCGCGACGATTACATGGAAGGGCTCAAGCTCACCGACGCCGAA TACCAGGTTGTGGTGTCGTTGGATGAGCGCTCGCGCTGTTTCCTGGTCAAGCAGGGCCACGCGTCGGCGGTGTGCCAGCT CAACCTGCGCGGGATGGATGACGCGCTGTCGGTGATTTCCTCGTCCACCGACAATATCGAGATCATGCACCAAATTCTGG CGGGCAAGGCCGGCAAGCTGGGCGTCACCGTGGACCAACTGACGCCGGAGCAATGGTTGGCCGATTTCTATGCCAACCGC AAGGGCTCCGGTAAGCGCAAGTCGGCCAAGGACAAGGAGGTCGAAGATGCATAG
Upstream 100 bases:
>100_bases AGCACGTAGCCGTTACCAACCCCACGCATACAACTCGCGTGGGGTTGGTGTTTGCGATGGTCGCTTGGTGTGATGCTTCC TCTCTAAATTTGGTAAGACC
Downstream 100 bases:
>100_bases TCAGTCCAGGCACGCGAAGCGGTTCCACACCGCACCATCTTTATTTGTGTCACAGGAGGCGAAGAACACCATGGCAATCA AGTTCAGACATTTTTCCCGG
Product: VirB4 protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 817; Mature: 817
Protein sequence:
>817_residues MFSPDSPISEFVSISTHVAPSVVKTTAGDYLLIWHLGGLPFVGRDEFELEQRHNTFNRLLQTLRAPDFANVAFWVHDVRR RRRIGAGGRFKQAFNQTLSDEYYTALSSQKIMQNELYFSMIYRPVVTGRRLVEKSANPDKIRAEEEQAVAKVVELATNVE AVLKDYAPYRLGMYEAKNGLVFSETLEFLGYLLNRIDEPVPVLPAPVPAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL NIKEYADGTYPGILNGLKYLDSEYVMTHSFSPVGRHDALKVLERTKGMMVSSGDKSSTQIRDLDVAMDDVASGNFVLGEY HFTLAVYADSQEKLARQIATTRAELSNAGFVSAKEDLAIASSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQH NNPWGDCVTTLQTTNGQPYYFNFHATHPSENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPIPTIFFFDKDRGA EIFVRACGGNYLALENGSPTGFNPFQCERNEANTQFLAELIKVLGGKAEYSAREEEDIYRAVEGMLDTPMHLRSMSNFRK SLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRASIIGFDYTDVIDNAEVRVPVINYLLHRLEALIDGRPLIYVM DEFWKILDGKGGLKEFAKNKQKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMILLPNPNASRDDYMEGLKLTDAE YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILAGKAGKLGVTVDQLTPEQWLADFYANR KGSGKRKSAKDKEVEDA
Sequences:
>Translated_817_residues MFSPDSPISEFVSISTHVAPSVVKTTAGDYLLIWHLGGLPFVGRDEFELEQRHNTFNRLLQTLRAPDFANVAFWVHDVRR RRRIGAGGRFKQAFNQTLSDEYYTALSSQKIMQNELYFSMIYRPVVTGRRLVEKSANPDKIRAEEEQAVAKVVELATNVE AVLKDYAPYRLGMYEAKNGLVFSETLEFLGYLLNRIDEPVPVLPAPVPAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL NIKEYADGTYPGILNGLKYLDSEYVMTHSFSPVGRHDALKVLERTKGMMVSSGDKSSTQIRDLDVAMDDVASGNFVLGEY HFTLAVYADSQEKLARQIATTRAELSNAGFVSAKEDLAIASSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQH NNPWGDCVTTLQTTNGQPYYFNFHATHPSENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPIPTIFFFDKDRGA EIFVRACGGNYLALENGSPTGFNPFQCERNEANTQFLAELIKVLGGKAEYSAREEEDIYRAVEGMLDTPMHLRSMSNFRK SLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRASIIGFDYTDVIDNAEVRVPVINYLLHRLEALIDGRPLIYVM DEFWKILDGKGGLKEFAKNKQKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMILLPNPNASRDDYMEGLKLTDAE YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILAGKAGKLGVTVDQLTPEQWLADFYANR KGSGKRKSAKDKEVEDA >Mature_817_residues MFSPDSPISEFVSISTHVAPSVVKTTAGDYLLIWHLGGLPFVGRDEFELEQRHNTFNRLLQTLRAPDFANVAFWVHDVRR RRRIGAGGRFKQAFNQTLSDEYYTALSSQKIMQNELYFSMIYRPVVTGRRLVEKSANPDKIRAEEEQAVAKVVELATNVE AVLKDYAPYRLGMYEAKNGLVFSETLEFLGYLLNRIDEPVPVLPAPVPAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL NIKEYADGTYPGILNGLKYLDSEYVMTHSFSPVGRHDALKVLERTKGMMVSSGDKSSTQIRDLDVAMDDVASGNFVLGEY HFTLAVYADSQEKLARQIATTRAELSNAGFVSAKEDLAIASSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQH NNPWGDCVTTLQTTNGQPYYFNFHATHPSENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPIPTIFFFDKDRGA EIFVRACGGNYLALENGSPTGFNPFQCERNEANTQFLAELIKVLGGKAEYSAREEEDIYRAVEGMLDTPMHLRSMSNFRK SLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRASIIGFDYTDVIDNAEVRVPVINYLLHRLEALIDGRPLIYVM DEFWKILDGKGGLKEFAKNKQKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMILLPNPNASRDDYMEGLKLTDAE YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILAGKAGKLGVTVDQLTPEQWLADFYANR KGSGKRKSAKDKEVEDA
Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 91054; Mature: 91054
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSPDSPISEFVSISTHVAPSVVKTTAGDYLLIWHLGGLPFVGRDEFELEQRHNTFNRLL CCCCCCCHHHHHHHHHHHCHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH QTLRAPDFANVAFWVHDVRRRRRIGAGGRFKQAFNQTLSDEYYTALSSQKIMQNELYFSM HHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYRPVVTGRRLVEKSANPDKIRAEEEQAVAKVVELATNVEAVLKDYAPYRLGMYEAKNGL HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCE VFSETLEFLGYLLNRIDEPVPVLPAPVPAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL EHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCHHHHHE NIKEYADGTYPGILNGLKYLDSEYVMTHSFSPVGRHDALKVLERTKGMMVSSGDKSSTQI EHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCEE RDLDVAMDDVASGNFVLGEYHFTLAVYADSQEKLARQIATTRAELSNAGFVSAKEDLAIA EHHHHHHHHCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH SSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQHNNPWGDCVTTLQTTNGQPYY HHHHHHCCCCEEEEEEECCCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHEECCCCCEEE FNFHATHPSENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPIPTIFFFDKDRGA EEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC EIFVRACGGNYLALENGSPTGFNPFQCERNEANTQFLAELIKVLGGKAEYSAREEEDIYR EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH AVEGMLDTPMHLRSMSNFRKSLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRAS HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCEEECCHHH IIGFDYTDVIDNAEVRVPVINYLLHRLEALIDGRPLIYVMDEFWKILDGKGGLKEFAKNK EECCCHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCHHHHHHHH QKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMILLPNPNASRDDYMEGLKLTDAE HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCEECCCC YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILAGKAGKL EEEEEEECCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCC GVTVDQLTPEQWLADFYANRKGSGKRKSAKDKEVEDA CEEHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFSPDSPISEFVSISTHVAPSVVKTTAGDYLLIWHLGGLPFVGRDEFELEQRHNTFNRLL CCCCCCCHHHHHHHHHHHCHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH QTLRAPDFANVAFWVHDVRRRRRIGAGGRFKQAFNQTLSDEYYTALSSQKIMQNELYFSM HHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYRPVVTGRRLVEKSANPDKIRAEEEQAVAKVVELATNVEAVLKDYAPYRLGMYEAKNGL HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCE VFSETLEFLGYLLNRIDEPVPVLPAPVPAYLPVSKHMFANKTGDFVIRTPDGINHFGAIL EHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCHHHHHE NIKEYADGTYPGILNGLKYLDSEYVMTHSFSPVGRHDALKVLERTKGMMVSSGDKSSTQI EHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCEE RDLDVAMDDVASGNFVLGEYHFTLAVYADSQEKLARQIATTRAELSNAGFVSAKEDLAIA EHHHHHHHHCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH SSFYSQLPGNWRFRTRIANLSSLNFLGLSPLHNFAQGKQHNNPWGDCVTTLQTTNGQPYY HHHHHHCCCCEEEEEEECCCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHEECCCCCEEE FNFHATHPSENSLGEKAIGNTMVIGKSGTGKTALINFLLSQVQKFDPIPTIFFFDKDRGA EEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC EIFVRACGGNYLALENGSPTGFNPFQCERNEANTQFLAELIKVLGGKAEYSAREEEDIYR EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH AVEGMLDTPMHLRSMSNFRKSLPNMGDDGLYARLRRWTAGNSLGWVFDNPVDTIDLTRAS HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCEEECCHHH IIGFDYTDVIDNAEVRVPVINYLLHRLEALIDGRPLIYVMDEFWKILDGKGGLKEFAKNK EECCCHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCHHHHHHHH QKTIRKQNGLGIFATQSPEDALASDIAAALIEQTATMILLPNPNASRDDYMEGLKLTDAE HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCEECCCC YQVVVSLDERSRCFLVKQGHASAVCQLNLRGMDDALSVISSSTDNIEIMHQILAGKAGKL EEEEEEECCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCC GVTVDQLTPEQWLADFYANRKGSGKRKSAKDKEVEDA CEEHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10940027 [H]