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The map label for this gene is rhaS [H]

Identifier: 21243284

GI number: 21243284

Start: 3009586

End: 3010266

Strand: Direct

Name: rhaS [H]

Synonym: XAC2551

Alternate gene names: 21243284

Gene position: 3009586-3010266 (Clockwise)

Preceding gene: 21243271

Following gene: 21243285

Centisome position: 58.15

GC content: 63.73

Gene sequence:

>681_bases
ATGCAGACGCTGTTCGATGCACTGCCGGATGTGGTGTTCTTCATCAAGGACAGCGAGGGGCGCTACACCCATTGCAACCT
GACCCTGGTGCGCCGGTTGGGACGCAAGCTGCGCAGCGAGATCATCGGCCGCTCGCCGCTGGAAGTGTTCCCGTTGCCGC
TGGGCGGCAGCTACATGATGCAGGACCGCCGCGTGCTGTGTGGCGAGCTCATCGACAACCAGCTCGAAGTGCATCTGTAC
CCCAACCGCCTGCCGGGCTGGTGCCTGACCTTCAAACGCCCGCTGTGCGAGGCCAATGAGGTGATCGGTGTGGTCGGCAT
CTCGCGCGATCTGGGCCAGCCCGACAGCCGTCATTCCGCCTACGAACGCTTGAGCCAGGTGATGGAACACATGCAGACCA
ACTTCGGAGACAACCTGCGCGTGCAGAGCCTGGCCGACCTGGCCGGGCTGTCGGTGGCGCAGCTGGAACGTCACTTCCGC
CGCGTGTTTCAGGTCACCCCGCAGCAATTGCTGACCAAGTTGCGCATCGAATCGGCGATGCGGCTGCTGTACGGCGACGA
CAGCATCGCCAGCATCGGGCAACGCTGCGGCTTCGCCGACCAGAGTGCCTTCGCGCGCCAGTTCAAGGCCACCGTCGGCA
TGACGCCGCGTGATTACCGCGCGCTCAAAGGTCAGTTATAA

Upstream 100 bases:

>100_bases
GCGTTTGCGCTAGGATCATTGCTGGGCTGCACCGTCGTGCAACCGTCTAATCGTGACCGCTACCATGACCCTGATGGACC
TCAACCTGCCCGCCCTGGAA

Downstream 100 bases:

>100_bases
AGACACAACTTCGCGTTGACACATCGCTGGCAAAAATGCCGAATTCGGCAGGATTTGCCACGCGCTAGCGCACCCAGGTG
AGCCGCCATACCGACGGCAG

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MQTLFDALPDVVFFIKDSEGRYTHCNLTLVRRLGRKLRSEIIGRSPLEVFPLPLGGSYMMQDRRVLCGELIDNQLEVHLY
PNRLPGWCLTFKRPLCEANEVIGVVGISRDLGQPDSRHSAYERLSQVMEHMQTNFGDNLRVQSLADLAGLSVAQLERHFR
RVFQVTPQQLLTKLRIESAMRLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL

Sequences:

>Translated_226_residues
MQTLFDALPDVVFFIKDSEGRYTHCNLTLVRRLGRKLRSEIIGRSPLEVFPLPLGGSYMMQDRRVLCGELIDNQLEVHLY
PNRLPGWCLTFKRPLCEANEVIGVVGISRDLGQPDSRHSAYERLSQVMEHMQTNFGDNLRVQSLADLAGLSVAQLERHFR
RVFQVTPQQLLTKLRIESAMRLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL
>Mature_226_residues
MQTLFDALPDVVFFIKDSEGRYTHCNLTLVRRLGRKLRSEIIGRSPLEVFPLPLGGSYMMQDRRVLCGELIDNQLEVHLY
PNRLPGWCLTFKRPLCEANEVIGVVGISRDLGQPDSRHSAYERLSQVMEHMQTNFGDNLRVQSLADLAGLSVAQLERHFR
RVFQVTPQQLLTKLRIESAMRLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=103, Percent_Identity=31.0679611650485, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082197, Length=115, Percent_Identity=30.4347826086957, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 25701; Mature: 25701

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLFDALPDVVFFIKDSEGRYTHCNLTLVRRLGRKLRSEIIGRSPLEVFPLPLGGSYMM
CCHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH
QDRRVLCGELIDNQLEVHLYPNRLPGWCLTFKRPLCEANEVIGVVGISRDLGQPDSRHSA
HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCHHHEEEEEECCCCCCCCCHHHHH
YERLSQVMEHMQTNFGDNLRVQSLADLAGLSVAQLERHFRRVFQVTPQQLLTKLRIESAM
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL
HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCC
>Mature Secondary Structure
MQTLFDALPDVVFFIKDSEGRYTHCNLTLVRRLGRKLRSEIIGRSPLEVFPLPLGGSYMM
CCHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH
QDRRVLCGELIDNQLEVHLYPNRLPGWCLTFKRPLCEANEVIGVVGISRDLGQPDSRHSA
HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCHHHEEEEEECCCCCCCCCHHHHH
YERLSQVMEHMQTNFGDNLRVQSLADLAGLSVAQLERHFRRVFQVTPQQLLTKLRIESAM
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RLLYGDDSIASIGQRCGFADQSAFARQFKATVGMTPRDYRALKGQL
HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA