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The map label for this gene is rpfN [H]

Identifier: 21243237

GI number: 21243237

Start: 2930053

End: 2931189

Strand: Direct

Name: rpfN [H]

Synonym: XAC2504

Alternate gene names: 21243237

Gene position: 2930053-2931189 (Clockwise)

Preceding gene: 21243236

Following gene: 21243249

Centisome position: 56.61

GC content: 64.29

Gene sequence:

>1137_bases
ATGATCGACGGCGGCCGCAAAAGCGGCGACGCCTACGCAGGCCAGTTGATGGTCGGCACCGATGTCGACATGGACCGCCT
GTTCGGCTGGAACGGCGCCACGGTGAAGCTGTACGTCACCAACCGCCACGGCACCAACCTGGCCAACAGCAGCATTGGCA
ACAGCACCTCGGTGCAGGAAATCTACGGCGGCCAGGGCACGCGCCTGGCCAACTTCACCCTGCTGCAGAAGCTCTTCAAC
GACCGTCTGGAACTGGAAGCCGGCCGCAGCGTGGCCAACATCCACTTCCTCGGCTCGGACCTGTGCCAGTACTTCCAGGG
CAACTCGGCCTGCGGCAACCCCACCTTCGTCTTCCGCACCAGCAACTTCACCTACTGGCCGGTCTCCAGCTGGGCCGCGC
ATGCTACCGCCTGGGTCACACCGAAGGTCTATCTGCATGTCGGCGCCTACGAGGTCAACCCAATCCAGGCGCAGGACGGC
CAGCACGGCCTGAACTGGAGCACCAACGACACCACCGGCGTGGTGGTGCCCTATGCCGTGGGCTACAAGAACAAGGGCGG
CGACGGCAGCATGGCCGCCATGTACGAACTGGGCGGCTGGCAGGACAACTCCGACTACTCCGACCCGCTGCGCGACCGCA
ACGGCAACCCGGCCGTACTGAGCGGCTTGGCGTATGAAAACAAGCAAGGCCGCTCGGGCCTGTTCGCACGCTTCGAACAG
CAGGTGACCAATCCCGACCCGTCGGGCACACGCGGCCTGACCGTGTTCGGCGCTGTGCTGCAGAGCACCGGCGGCCAAGC
GATCGAGGACCATTTCATCCAGCTCGGCCTGGTGCAGAAAGGCACCTTCGCCAGCCGCCCGCAGGACAACATTGCATTTG
TGATCACGCAGCAGAAATACAGCGACGAAGCGATCGAAAACCTGCGCCTGGCGCGCGCCTCCGCCGGCGGCACCGGCACC
CCGGCCGACAACCAGATCATGATGGAGCTGAGCTACGGCATCCAGGTCACCAAGCGCCTGCGCATCGCGCCGAACCTGCA
TTACGTCATCAACCCCGACCAGTTCAACGAACCGACCCGCACCACCGATCTGAAGAACGCGCTGATCGCGGGCATGCGGA
TCGACTGGAATCTGTGA

Upstream 100 bases:

>100_bases
GTGCCTGTCGCTGACCCTGGCACTCACCCCGCTCGCCCACGCGCAGGACGCCGCCGACGCCTTCAAGCTCAAGCTGGGCT
ACACCGGCGAAGCCGCCTCG

Downstream 100 bases:

>100_bases
CCCGTCAAGAAGCTGCGCGCGTTGCGCGCATGCTTGCCTGCCACCATTGTTTTAAAAGAGTGGCGCGTGCGTTGCATCTG
ACTGCAATGCAACGTATTGC

Product: regulator of pathogenicity factors

Products: NA

Alternate protein names: Glucose porin; Outer membrane protein D1 [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MIDGGRKSGDAYAGQLMVGTDVDMDRLFGWNGATVKLYVTNRHGTNLANSSIGNSTSVQEIYGGQGTRLANFTLLQKLFN
DRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRTSNFTYWPVSSWAAHATAWVTPKVYLHVGAYEVNPIQAQDG
QHGLNWSTNDTTGVVVPYAVGYKNKGGDGSMAAMYELGGWQDNSDYSDPLRDRNGNPAVLSGLAYENKQGRSGLFARFEQ
QVTNPDPSGTRGLTVFGAVLQSTGGQAIEDHFIQLGLVQKGTFASRPQDNIAFVITQQKYSDEAIENLRLARASAGGTGT
PADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTRTTDLKNALIAGMRIDWNL

Sequences:

>Translated_378_residues
MIDGGRKSGDAYAGQLMVGTDVDMDRLFGWNGATVKLYVTNRHGTNLANSSIGNSTSVQEIYGGQGTRLANFTLLQKLFN
DRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRTSNFTYWPVSSWAAHATAWVTPKVYLHVGAYEVNPIQAQDG
QHGLNWSTNDTTGVVVPYAVGYKNKGGDGSMAAMYELGGWQDNSDYSDPLRDRNGNPAVLSGLAYENKQGRSGLFARFEQ
QVTNPDPSGTRGLTVFGAVLQSTGGQAIEDHFIQLGLVQKGTFASRPQDNIAFVITQQKYSDEAIENLRLARASAGGTGT
PADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTRTTDLKNALIAGMRIDWNL
>Mature_378_residues
MIDGGRKSGDAYAGQLMVGTDVDMDRLFGWNGATVKLYVTNRHGTNLANSSIGNSTSVQEIYGGQGTRLANFTLLQKLFN
DRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRTSNFTYWPVSSWAAHATAWVTPKVYLHVGAYEVNPIQAQDG
QHGLNWSTNDTTGVVVPYAVGYKNKGGDGSMAAMYELGGWQDNSDYSDPLRDRNGNPAVLSGLAYENKQGRSGLFARFEQ
QVTNPDPSGTRGLTVFGAVLQSTGGQAIEDHFIQLGLVQKGTFASRPQDNIAFVITQQKYSDEAIENLRLARASAGGTGT
PADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTRTTDLKNALIAGMRIDWNL

Specific function: Substrate-selective channel for a variety of different sugars. Could potentially facilitate the diffusion of diverse compounds, dependent on the presence of a hydroxyl group, but is presumably restricted to carbohydrates. Involved in the transport of gluc

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049 [H]

Pfam domain/function: PF04966 OprB [H]

EC number: NA

Molecular weight: Translated: 41254; Mature: 41254

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDGGRKSGDAYAGQLMVGTDVDMDRLFGWNGATVKLYVTNRHGTNLANSSIGNSTSVQE
CCCCCCCCCCCEECEEEEECCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHH
IYGGQGTRLANFTLLQKLFNDRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRT
HHCCCCCEEHHHHHHHHHHCCCEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCEEEEEC
SNFTYWPVSSWAAHATAWVTPKVYLHVGAYEVNPIQAQDGQHGLNWSTNDTTGVVVPYAV
CCEEEECCCCCHHCEEEEECCEEEEEECCEEECCEECCCCCCCCCCCCCCCCEEEEEEEE
GYKNKGGDGSMAAMYELGGWQDNSDYSDPLRDRNGNPAVLSGLAYENKQGRSGLFARFEQ
CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHH
QVTNPDPSGTRGLTVFGAVLQSTGGQAIEDHFIQLGLVQKGTFASRPQDNIAFVITQQKY
HHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCCCCCCEEEEEECCCC
SDEAIENLRLARASAGGTGTPADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTR
CHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCEEEEECCCCCCCCCC
TTDLKNALIAGMRIDWNL
CHHHHHHHEECEEEEECC
>Mature Secondary Structure
MIDGGRKSGDAYAGQLMVGTDVDMDRLFGWNGATVKLYVTNRHGTNLANSSIGNSTSVQE
CCCCCCCCCCCEECEEEEECCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHH
IYGGQGTRLANFTLLQKLFNDRLELEAGRSVANIHFLGSDLCQYFQGNSACGNPTFVFRT
HHCCCCCEEHHHHHHHHHHCCCEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCEEEEEC
SNFTYWPVSSWAAHATAWVTPKVYLHVGAYEVNPIQAQDGQHGLNWSTNDTTGVVVPYAV
CCEEEECCCCCHHCEEEEECCEEEEEECCEEECCEECCCCCCCCCCCCCCCCEEEEEEEE
GYKNKGGDGSMAAMYELGGWQDNSDYSDPLRDRNGNPAVLSGLAYENKQGRSGLFARFEQ
CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHH
QVTNPDPSGTRGLTVFGAVLQSTGGQAIEDHFIQLGLVQKGTFASRPQDNIAFVITQQKY
HHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCCCCCCEEEEEECCCC
SDEAIENLRLARASAGGTGTPADNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTR
CHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCEEEEECCCCCCCCCC
TTDLKNALIAGMRIDWNL
CHHHHHHHEECEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125108; 10984043; 2450582; 8132494; 7768797 [H]