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The map label for this gene is ycdT [C]

Identifier: 21243179

GI number: 21243179

Start: 2847359

End: 2848399

Strand: Direct

Name: ycdT [C]

Synonym: XAC2446

Alternate gene names: 21243179

Gene position: 2847359-2848399 (Clockwise)

Preceding gene: 21243178

Following gene: 21243182

Centisome position: 55.02

GC content: 67.15

Gene sequence:

>1041_bases
TTGCTGCCAGGCGGCGTCAACGCCACGATCGGGGCGCGCCTGCCGGCCAACGAAGATGAGCGCGTGGAGGCACTGCATGC
TTACCGCCTGCTGGACACCTCACCGGAGCCGAGCTACGACGCGTTCACCTCGATCGCGGCCGCGGTCTGCCGGATGCCGA
TGGCGCTGATCTCGCTGGTCGATACGCATCGCCAATGGTTCAAGTCCAGGATCGGCATGCAGCAGAACGAGACGCCGCGT
GAGCTGTCGTTTTGCGCGCATGCCATTCTCGAACCCGATCAGGTGATGGAAGTCGGCGACACCCATCTGGACGAGCGGTT
TGTGGGCAACGCGCTGGTGACAGGCGAGCCGCAGATCCGCTTCTATGCAGGCGCGCCGTTGTTGACCCCGGACGGCATCG
CGCTGGGCACCCTGTGCGTGCTGGATCGCGTTCCGCGGCGACTGTCGGTGGCCGAGCGCGACGCGCTGCAAGCATTGGCC
AGGCAAGTCGTCAGCACCCTCGAACTGCAACAGGCCGCGCGACTGGTGGAGCTGGATGCACTGCGCGATGCGCTCACCGG
GCGATGGAATCGCGCCGGGCTGGAGCACGCCTTGCACGCGCTTGCCGATGCGCCCAGCTCTGCCGCGGATGCGCCACTGG
GTTTCATGCTGCTCGAACTGGATGGCTTCAAGCGGCAAAAATTGCAGGCCGGCGCGCCAGCGGCCGATGCCACCTTGCTG
CAGGTCGCTACATTGCTGGAAGCGCAGCTTCCGCCTGCCGCAATCGTGGCGCGCCTGGCCTGCGATCAATTCTGCGTGGC
GCTGCCGGCGACCGCAGCATCTGCAGCCCTTGCTGCTGCCGAAGACTTGCGCAAGGCGGTGGAAGACGCGCACTGGCCGA
CCGGCCCGCTGACGCTCAGCGCAGGTCTGGTGGATGTTGCCACGCCAACCTCGCTCGACAGCGCTACCTTGCTGGCCCGT
GCGCGGCACGCGTTGCAGCGGGCGCGTGACGATGGCCGCAACCGCGTGCATTGCTTCGACGGGTGGCAGCTGCGGGCCTG
A

Upstream 100 bases:

>100_bases
TTGTCGCATTAACCCTCATCGCCTTGATGGCGCCTTGTTCCCGGTGGTGTTTTGCATGCAGATACCCGACGCACCCGCGT
TGAACCTGATCCACGCAACG

Downstream 100 bases:

>100_bases
TCGACGCAGCCCGCGCCGATCGCCCTGCGGCACGGCTGTCGCTCAGGCCGCCAGTGCGTCGGTGTTTCCGGCGATCTCGT
CCACCTGCAGCACCTGCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: Signal Transduction Histidine Kinase; Diguanylate Cyclase; Multi-Sensor Hybrid Histidine Kinase; GAF Sensor Protein; Two-Component Hybrid Sensor And Regulator; Multi-Sensor Signal Transduction Histidine Kinase; GGDEF Domain-Containing Protein; Sensor Protein; GAF Domain-Containing Protein; Two-Component System Sensor Histidine Kinase; Histidine Kinase Response Regulator Hybrid Protein; Diguanylate Cyclase With PAS/PAC Sensor; Histidine Kinase-Response Regulator Hybrid Protein; Two-Component Sensor Histidine Kinase; PAS Sensor Protein; GGDEF Domain Protein; GAF Sensor Signal Transduction Histidine Kinase; PAS Fold Family; Diguanylate Cyclase With PAS/PAC And GAF Sensors; Sensory Box/GGDEF Family Protein; Histidine Kinase/Response Regulator Hybrid Protein; Sensor Histidine Kinase; GAF Sensor Hybrid Histidine Kinase; GAF Sensor Diguanylate Cyclase; GAF Domain/GGDEF Domain/EAL Domain-Containing Protein; Signal Transduction Protein; Diguanylate Phosphodiesterase With GAF Sensor; Sensory Transduction Histidine Kinase; PAS/PAC Sensor Protein; Response Regulator Receiver Domain Protein; HWE Histidine Kinase; GAF Sensor-Containing Diguanylate Cyclase; Pas/Pac Sensor Protein; Stage II Sporulation E Family Protein; Diguanylate Cyclase/Phosphodiesterase; GAF Domain/GGDEF Domain Protein; Two Component System Sensor Protein; Sensory Box Histidine Kinase/Response Regulator; Protein Containing GAF Domain; GAF Domain Protein; Adenylate Cyclase; Sensor Histidine Kinase/GAF Domain-Containing Protein; Histidine Kinase Of HWE Family; GAF/PAS-Family Sensor Histidine Kinase; Two-Component System Sensor Kinase; GAF And Chase3 Sensor Phosphotransfer Protein; FOG GGDEF Domain Protein; Serine/Threonine Protein Kinase; Cyclic Diguanylate Phosphodiesterase/Diguanylate Cyclase; Diguanylate-Cyclase; Signaling Protein; Gaf Sensor Signal Transduction Histidine Kinase; GGDEF And GAF Signalling Protein; Phosphodiesterase; GGDEF Family Protein; Sensor Kinase Protein; ATPase Histidine Kinase- DNA Gyrase B- And

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MLPGGVNATIGARLPANEDERVEALHAYRLLDTSPEPSYDAFTSIAAAVCRMPMALISLVDTHRQWFKSRIGMQQNETPR
ELSFCAHAILEPDQVMEVGDTHLDERFVGNALVTGEPQIRFYAGAPLLTPDGIALGTLCVLDRVPRRLSVAERDALQALA
RQVVSTLELQQAARLVELDALRDALTGRWNRAGLEHALHALADAPSSAADAPLGFMLLELDGFKRQKLQAGAPAADATLL
QVATLLEAQLPPAAIVARLACDQFCVALPATAASAALAAAEDLRKAVEDAHWPTGPLTLSAGLVDVATPTSLDSATLLAR
ARHALQRARDDGRNRVHCFDGWQLRA

Sequences:

>Translated_346_residues
MLPGGVNATIGARLPANEDERVEALHAYRLLDTSPEPSYDAFTSIAAAVCRMPMALISLVDTHRQWFKSRIGMQQNETPR
ELSFCAHAILEPDQVMEVGDTHLDERFVGNALVTGEPQIRFYAGAPLLTPDGIALGTLCVLDRVPRRLSVAERDALQALA
RQVVSTLELQQAARLVELDALRDALTGRWNRAGLEHALHALADAPSSAADAPLGFMLLELDGFKRQKLQAGAPAADATLL
QVATLLEAQLPPAAIVARLACDQFCVALPATAASAALAAAEDLRKAVEDAHWPTGPLTLSAGLVDVATPTSLDSATLLAR
ARHALQRARDDGRNRVHCFDGWQLRA
>Mature_346_residues
MLPGGVNATIGARLPANEDERVEALHAYRLLDTSPEPSYDAFTSIAAAVCRMPMALISLVDTHRQWFKSRIGMQQNETPR
ELSFCAHAILEPDQVMEVGDTHLDERFVGNALVTGEPQIRFYAGAPLLTPDGIALGTLCVLDRVPRRLSVAERDALQALA
RQVVSTLELQQAARLVELDALRDALTGRWNRAGLEHALHALADAPSSAADAPLGFMLLELDGFKRQKLQAGAPAADATLL
QVATLLEAQLPPAAIVARLACDQFCVALPATAASAALAAAEDLRKAVEDAHWPTGPLTLSAGLVDVATPTSLDSATLLAR
ARHALQRARDDGRNRVHCFDGWQLRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37143; Mature: 37143

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPGGVNATIGARLPANEDERVEALHAYRLLDTSPEPSYDAFTSIAAAVCRMPMALISLV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DTHRQWFKSRIGMQQNETPRELSFCAHAILEPDQVMEVGDTHLDERFVGNALVTGEPQIR
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCEEECCCCCEE
FYAGAPLLTPDGIALGTLCVLDRVPRRLSVAERDALQALARQVVSTLELQQAARLVELDA
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDALTGRWNRAGLEHALHALADAPSSAADAPLGFMLLELDGFKRQKLQAGAPAADATLL
HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHH
QVATLLEAQLPPAAIVARLACDQFCVALPATAASAALAAAEDLRKAVEDAHWPTGPLTLS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
AGLVDVATPTSLDSATLLARARHALQRARDDGRNRVHCFDGWQLRA
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECC
>Mature Secondary Structure
MLPGGVNATIGARLPANEDERVEALHAYRLLDTSPEPSYDAFTSIAAAVCRMPMALISLV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DTHRQWFKSRIGMQQNETPRELSFCAHAILEPDQVMEVGDTHLDERFVGNALVTGEPQIR
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCEEECCCCCEE
FYAGAPLLTPDGIALGTLCVLDRVPRRLSVAERDALQALARQVVSTLELQQAARLVELDA
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRDALTGRWNRAGLEHALHALADAPSSAADAPLGFMLLELDGFKRQKLQAGAPAADATLL
HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHH
QVATLLEAQLPPAAIVARLACDQFCVALPATAASAALAAAEDLRKAVEDAHWPTGPLTLS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
AGLVDVATPTSLDSATLLARARHALQRARDDGRNRVHCFDGWQLRA
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA