| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yjeS [H]
Identifier: 21243143
GI number: 21243143
Start: 2806774
End: 2807841
Strand: Direct
Name: yjeS [H]
Synonym: XAC2409
Alternate gene names: 21243143
Gene position: 2806774-2807841 (Clockwise)
Preceding gene: 77748653
Following gene: 21243144
Centisome position: 54.23
GC content: 65.64
Gene sequence:
>1068_bases ATGTCTGCCGTTCTTGCCCGCCCCGACCCTGCCGATGCCGCTGCGCGCATTCGCGTGCTTGCGCGCGAAGCCGGCTTTCA ACGCTGCGGCATTACCGGCATTGAGCTGGGCGAGGACGAGGTGCATCTGCGCAGCTGGCTGGAAGAAGGCCTGTACGGCA CCATGCACTGGATGGCCCAGCACGGCGACAAACGCTCGCGCCCGCAAGAATTAGTGCCCGGCACCCTGCGCGTGTTGTCG GTCGGCATGGATTACGGCCGCAAGGACGACACCGAGGCCTGGAACACCTTGCACGACGGCAGCCGCGCCTATGTAGCGCG CTACGCGCTGGGGCGCGATTACCACAAGCTGATGCGCAACCGGCTGCAGAAGCTGGCCGAGCGCATCCAGGGCGAAATTG GCGCATTCGGTTTCCGCGTGTTCGTCGACTCGGCGCCGGTGCTGGAGCGCGCGTTGGCACGCAATGCCGGCCTGGGCTGG ATCGGCAAGCACACCTGCCTGATCGATCGCAACGGCGGCTCGTGGTTCTTTCTCGGCGAGATCTACCTCGACCTGCCACT GCCGATCGACACGCCCGCCACCGCGCATTGCGGCACCTGCACGCGCTGCATCGATATCTGCCCGACCCAAGCCATCATCG CGCCCTACCGGCTGGATGCGCGCCGCTGCATCGCATACCTCACCATCGAACACGACGGCGCAATTCCCGAAGACATGCGC AAGCCGATCGGCAACCGCATCTTCGGCTGCGACGACTGCCAACTGATCTGTCCCTGGAACAAGTTCGCCAAGCGCACCGA CGAAGCCGATTTCCGCGCCCGCAACGACCTGGACGTGGCCACGCTGCCGCAACTGTTCGCCTGGAATGAGGACGAGTTCC TGGGCCGCACCGAGGGCAGCCCGATCCGCCGCAGCGGATACGAGCGTTGGCTGCGCAACATTGCCGTGGGCCTGGGCAAT GCGCCTGGTACGCCAGAAGTGCTGGCCGCACTGGAAGCACGTCGCTACGACGACTCGGCACTGGTGCGCGAACACGTTGG CTGGGCGCTGGCGCAACACGGTCTTTGA
Upstream 100 bases:
>100_bases CGCCGAGCAGCGTGGTGGCCTGCGCATCGAGCGTGCGCGCGGCGGCAGTGTCGTAAAGAGCGAGCGGTGCGTACATGCCG GGAATTCTATACTTGTCGCC
Downstream 100 bases:
>100_bases CCGGCACAGGCCACGTGTGAGCGCGTTGCGCATGCGGCAGCTGCAACCTGCACGTGCACGCGTTGGCCAACGCTGCGGCT CTGTTGCCATCGGCGTTCGC
Product: iron-sulfur cluster-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MSAVLARPDPADAAARIRVLAREAGFQRCGITGIELGEDEVHLRSWLEEGLYGTMHWMAQHGDKRSRPQELVPGTLRVLS VGMDYGRKDDTEAWNTLHDGSRAYVARYALGRDYHKLMRNRLQKLAERIQGEIGAFGFRVFVDSAPVLERALARNAGLGW IGKHTCLIDRNGGSWFFLGEIYLDLPLPIDTPATAHCGTCTRCIDICPTQAIIAPYRLDARRCIAYLTIEHDGAIPEDMR KPIGNRIFGCDDCQLICPWNKFAKRTDEADFRARNDLDVATLPQLFAWNEDEFLGRTEGSPIRRSGYERWLRNIAVGLGN APGTPEVLAALEARRYDDSALVREHVGWALAQHGL
Sequences:
>Translated_355_residues MSAVLARPDPADAAARIRVLAREAGFQRCGITGIELGEDEVHLRSWLEEGLYGTMHWMAQHGDKRSRPQELVPGTLRVLS VGMDYGRKDDTEAWNTLHDGSRAYVARYALGRDYHKLMRNRLQKLAERIQGEIGAFGFRVFVDSAPVLERALARNAGLGW IGKHTCLIDRNGGSWFFLGEIYLDLPLPIDTPATAHCGTCTRCIDICPTQAIIAPYRLDARRCIAYLTIEHDGAIPEDMR KPIGNRIFGCDDCQLICPWNKFAKRTDEADFRARNDLDVATLPQLFAWNEDEFLGRTEGSPIRRSGYERWLRNIAVGLGN APGTPEVLAALEARRYDDSALVREHVGWALAQHGL >Mature_354_residues SAVLARPDPADAAARIRVLAREAGFQRCGITGIELGEDEVHLRSWLEEGLYGTMHWMAQHGDKRSRPQELVPGTLRVLSV GMDYGRKDDTEAWNTLHDGSRAYVARYALGRDYHKLMRNRLQKLAERIQGEIGAFGFRVFVDSAPVLERALARNAGLGWI GKHTCLIDRNGGSWFFLGEIYLDLPLPIDTPATAHCGTCTRCIDICPTQAIIAPYRLDARRCIAYLTIEHDGAIPEDMRK PIGNRIFGCDDCQLICPWNKFAKRTDEADFRARNDLDVATLPQLFAWNEDEFLGRTEGSPIRRSGYERWLRNIAVGLGNA PGTPEVLAALEARRYDDSALVREHVGWALAQHGL
Specific function: Unknown
COG id: COG1600
COG function: function code C; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790608, Length=345, Percent_Identity=55.0724637681159, Blast_Score=395, Evalue=1e-111,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004453 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013542 - InterPro: IPR009051 [H]
Pfam domain/function: PF08331 DUF1730 [H]
EC number: NA
Molecular weight: Translated: 39798; Mature: 39667
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVLARPDPADAAARIRVLAREAGFQRCGITGIELGEDEVHLRSWLEEGLYGTMHWMAQ CCCCCCCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH HGDKRSRPQELVPGTLRVLSVGMDYGRKDDTEAWNTLHDGSRAYVARYALGRDYHKLMRN CCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHCHHHHHHHHH RLQKLAERIQGEIGAFGFRVFVDSAPVLERALARNAGLGWIGKHTCLIDRNGGSWFFLGE HHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEE IYLDLPLPIDTPATAHCGTCTRCIDICPTQAIIAPYRLDARRCIAYLTIEHDGAIPEDMR EEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCHHHCCCCEEEEEEEECCCCCCHHHH KPIGNRIFGCDDCQLICPWNKFAKRTDEADFRARNDLDVATLPQLFAWNEDEFLGRTEGS HHHCCCCCCCCCCEEECCCHHHHHCCCCCHHCCCCCCCHHHHHHHHCCCCHHHCCCCCCC PIRRSGYERWLRNIAVGLGNAPGTPEVLAALEARRYDDSALVREHVGWALAQHGL CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SAVLARPDPADAAARIRVLAREAGFQRCGITGIELGEDEVHLRSWLEEGLYGTMHWMAQ CCCCCCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH HGDKRSRPQELVPGTLRVLSVGMDYGRKDDTEAWNTLHDGSRAYVARYALGRDYHKLMRN CCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHCHHHHHHHHH RLQKLAERIQGEIGAFGFRVFVDSAPVLERALARNAGLGWIGKHTCLIDRNGGSWFFLGE HHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEE IYLDLPLPIDTPATAHCGTCTRCIDICPTQAIIAPYRLDARRCIAYLTIEHDGAIPEDMR EEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCHHHCCCCEEEEEEEECCCCCCHHHH KPIGNRIFGCDDCQLICPWNKFAKRTDEADFRARNDLDVATLPQLFAWNEDEFLGRTEGS HHHCCCCCCCCCCEEECCCHHHHHCCCCCHHCCCCCCCHHHHHHHHCCCCHHHCCCCCCC PIRRSGYERWLRNIAVGLGNAPGTPEVLAALEARRYDDSALVREHVGWALAQHGL CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]