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The map label for this gene is nocR [H]

Identifier: 21243011

GI number: 21243011

Start: 2663622

End: 2664539

Strand: Direct

Name: nocR [H]

Synonym: XAC2276

Alternate gene names: 21243011

Gene position: 2663622-2664539 (Clockwise)

Preceding gene: 21243010

Following gene: 21243012

Centisome position: 51.47

GC content: 67.76

Gene sequence:

>918_bases
ATGCTGCAGTTTCGTCAAATGGAAGTTTTCAGGGCAATGATGTTCACCGGCTCGGTCAAGGGCGCCGCATCGCTGATGCG
CCTCTCGCCCTCAGCAGTCAGCCGCATGGTCGCCCAGTTGGAGTGCGACGTCGGCTATCCGCTCTTCGAGCGCGTGAAGG
GACGGCTGGCGCCCACGGGCGAGGCGACCGCGCTGCTTCCCGAGGTGGAAGCCTGCTACCGGCATGCGCTGCAGCTATCC
GAGTTGGCAGAGAACCTGCGGGTGGGCTCCGCGGGGACACTCAACATCTGCGCCAGCCATTGCCTGAGCCGAGGGCTCGT
GCCCCGCGCGATCGCGCGCTTTCTCGCGCAATTCCCCAAGGTGCAGGTGCAGGTGCGCGCGAGCCTGCTCGCGGACATGC
CTGGGGAGGTGCTGAGCAACCGCGCAGATCTGGCGGTGTCGGTGCTGCCGCTGCACCACGCAAACCTGCAGGTGACGCCC
TTCACCGAGGGCCGCATGGTGTGCGTGGCTCCGCCCGGCCATGCCCTCGCCTCATTGCCGTCGGCGCAGTTCGAGGACAT
CGCGGCCTACCCGGTCATCACCCACCACCCGAGCATTCCGTTCGGACAACTGGTCACTGCGGCGTTCGAGCGTGCCCATG
TCCACCTGCCCTCCCGCATCCACATCTACCACACGGATGTCGCCTGCGCCCTGGTGCGCGCTGGCACGGGCGTGGCGATC
GTGGACGAGTTCACCGTCGATGGACTCGCCTGGGGCGGTGACCTCAGCGTCGTGCCGCTCGCGACCGGCATCGTGCTCAC
CCCGGCCGTGTTGCGCTCGATGCTTGCCGGCGGTCGTCCGCATGCCGATCAATTCGTTGCGGCACTGGAGGAAGAGGCAC
GGCGGGACCGCCGCGGAGGCGTGGCCGCAACGGCATGA

Upstream 100 bases:

>100_bases
CACCAGCATTTATTCCACCCATAAACGACGACCTCGATCCCATCGCGGTAATGCGCGCTGGACGCGATGAAATACGCGCC
TACCACCACATGAGCGCGCC

Downstream 100 bases:

>100_bases
CGGGGCACCGCCGTTATTCCTCGGATAAACAGCCGTTCTGCCCCCCAGGCAGCACGGCATCGATTGACGAAACCGCAAGC
GCCTCGGCGGATTTCGCAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLQFRQMEVFRAMMFTGSVKGAASLMRLSPSAVSRMVAQLECDVGYPLFERVKGRLAPTGEATALLPEVEACYRHALQLS
ELAENLRVGSAGTLNICASHCLSRGLVPRAIARFLAQFPKVQVQVRASLLADMPGEVLSNRADLAVSVLPLHHANLQVTP
FTEGRMVCVAPPGHALASLPSAQFEDIAAYPVITHHPSIPFGQLVTAAFERAHVHLPSRIHIYHTDVACALVRAGTGVAI
VDEFTVDGLAWGGDLSVVPLATGIVLTPAVLRSMLAGGRPHADQFVAALEEEARRDRRGGVAATA

Sequences:

>Translated_305_residues
MLQFRQMEVFRAMMFTGSVKGAASLMRLSPSAVSRMVAQLECDVGYPLFERVKGRLAPTGEATALLPEVEACYRHALQLS
ELAENLRVGSAGTLNICASHCLSRGLVPRAIARFLAQFPKVQVQVRASLLADMPGEVLSNRADLAVSVLPLHHANLQVTP
FTEGRMVCVAPPGHALASLPSAQFEDIAAYPVITHHPSIPFGQLVTAAFERAHVHLPSRIHIYHTDVACALVRAGTGVAI
VDEFTVDGLAWGGDLSVVPLATGIVLTPAVLRSMLAGGRPHADQFVAALEEEARRDRRGGVAATA
>Mature_305_residues
MLQFRQMEVFRAMMFTGSVKGAASLMRLSPSAVSRMVAQLECDVGYPLFERVKGRLAPTGEATALLPEVEACYRHALQLS
ELAENLRVGSAGTLNICASHCLSRGLVPRAIARFLAQFPKVQVQVRASLLADMPGEVLSNRADLAVSVLPLHHANLQVTP
FTEGRMVCVAPPGHALASLPSAQFEDIAAYPVITHHPSIPFGQLVTAAFERAHVHLPSRIHIYHTDVACALVRAGTGVAI
VDEFTVDGLAWGGDLSVVPLATGIVLTPAVLRSMLAGGRPHADQFVAALEEEARRDRRGGVAATA

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=273, Percent_Identity=28.9377289377289, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788481, Length=260, Percent_Identity=26.5384615384615, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693105, Length=240, Percent_Identity=21.25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=26.2295081967213, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32561; Mature: 32561

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQFRQMEVFRAMMFTGSVKGAASLMRLSPSAVSRMVAQLECDVGYPLFERVKGRLAPTG
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
EATALLPEVEACYRHALQLSELAENLRVGSAGTLNICASHCLSRGLVPRAIARFLAQFPK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC
VQVQVRASLLADMPGEVLSNRADLAVSVLPLHHANLQVTPFTEGRMVCVAPPGHALASLP
HHHHHHHHHHHCCCHHHHCCCCCEEEEEEEEECCCEEEEECCCCCEEEECCCCHHHHHCC
SAQFEDIAAYPVITHHPSIPFGQLVTAAFERAHVHLPSRIHIYHTDVACALVRAGTGVAI
CCHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCCEEE
VDEFTVDGLAWGGDLSVVPLATGIVLTPAVLRSMLAGGRPHADQFVAALEEEARRDRRGG
EEECCCCCEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
VAATA
CCCCC
>Mature Secondary Structure
MLQFRQMEVFRAMMFTGSVKGAASLMRLSPSAVSRMVAQLECDVGYPLFERVKGRLAPTG
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
EATALLPEVEACYRHALQLSELAENLRVGSAGTLNICASHCLSRGLVPRAIARFLAQFPK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC
VQVQVRASLLADMPGEVLSNRADLAVSVLPLHHANLQVTPFTEGRMVCVAPPGHALASLP
HHHHHHHHHHHCCCHHHHCCCCCEEEEEEEEECCCEEEEECCCCCEEEECCCCHHHHHCC
SAQFEDIAAYPVITHHPSIPFGQLVTAAFERAHVHLPSRIHIYHTDVACALVRAGTGVAI
CCHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCCEEE
VDEFTVDGLAWGGDLSVVPLATGIVLTPAVLRSMLAGGRPHADQFVAALEEEARRDRRGG
EEECCCCCEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
VAATA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]