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The map label for this gene is yeaM [H]

Identifier: 21242970

GI number: 21242970

Start: 2618236

End: 2619030

Strand: Direct

Name: yeaM [H]

Synonym: XAC2235

Alternate gene names: 21242970

Gene position: 2618236-2619030 (Clockwise)

Preceding gene: 21242961

Following gene: 77748640

Centisome position: 50.59

GC content: 61.13

Gene sequence:

>795_bases
ATGACAATCAGCGTTGCCCTCAACCAATCGGTATGCCAATTCGACCCCGACGCGGACGAGCGTCCGGCCGTTGCACTATT
GCTGGACATCGAACAAAACGATGTGGAGCAACCAGTGCACCAGCACAGAAAGGGGCAGTTGGTCATGGCCTTGCGTGGTG
GTGTCGTGTGCGAGGTGCCCAAAGCGATGTGGATGGTCCCGCCCCATCATGCCGTGTGGATTCCGGGCGGCATGCCCCAC
AGCAACCGTGCAACCGACAACGCGCGCATTGGCTTCTTGTTCGTGGAGCCTGGGGCCACTTTGATGCCGGAGACATGCTG
CACGATTGCGATCAACCCGATGGTGCGCGAACTTATCCTTTATCTCGCCGGGCAGCCTCCAGCCTATCCACATGAAAGTC
CAACGGCCCGCGTGGCAGCCGTGGTGCTCGAACAGCTGGCGACGGCACCCATCGAACGATTGCACCTGCCCGTTTCGGAC
CACCCGAAAATCCGTCATATCACGAACGCATGGACGGCCGATCCTGCGGACCGCCGCACACTTGCGCAGTGGGCCAGTCA
GTTGGCCATGAGTGACCGGTCTCTAGCTCGGCTGGTGCAACGAGAGACCGGGTTGAGCTTCGGGCGGTGGCGCCAGCAGT
GGCATCTGATCGTCGCCCTGCGCCAACTTACCGAAGGCGCAGCGGTGCAGCAGGTTGCTGGCAACCTCGGCTATGACTCG
GTGACGGCGTTCATCACCATGTTCAAGAAGATGTTGGGCAAGCCGCCTGCCCAGTACTTCGCGTCGTTGCGCTGA

Upstream 100 bases:

>100_bases
GCATTTCACAACGTCTATCGGGGCAAATACGGGAATACCCTCAATCTACGCTGCCGGCTTAAGATGTAATAGAGAAGGAA
AGACAGATGATCGCTAAATT

Downstream 100 bases:

>100_bases
CCCGGTGCATATGGCGTGCGCGAGGTCGGCCGATGCACCTTCTAGTCCACCAGATTGTGAACCTTGGCGATCTGCCCGCT
TGCAGGCCAAAGTCGAGCAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTISVALNQSVCQFDPDADERPAVALLLDIEQNDVEQPVHQHRKGQLVMALRGGVVCEVPKAMWMVPPHHAVWIPGGMPH
SNRATDNARIGFLFVEPGATLMPETCCTIAINPMVRELILYLAGQPPAYPHESPTARVAAVVLEQLATAPIERLHLPVSD
HPKIRHITNAWTADPADRRTLAQWASQLAMSDRSLARLVQRETGLSFGRWRQQWHLIVALRQLTEGAAVQQVAGNLGYDS
VTAFITMFKKMLGKPPAQYFASLR

Sequences:

>Translated_264_residues
MTISVALNQSVCQFDPDADERPAVALLLDIEQNDVEQPVHQHRKGQLVMALRGGVVCEVPKAMWMVPPHHAVWIPGGMPH
SNRATDNARIGFLFVEPGATLMPETCCTIAINPMVRELILYLAGQPPAYPHESPTARVAAVVLEQLATAPIERLHLPVSD
HPKIRHITNAWTADPADRRTLAQWASQLAMSDRSLARLVQRETGLSFGRWRQQWHLIVALRQLTEGAAVQQVAGNLGYDS
VTAFITMFKKMLGKPPAQYFASLR
>Mature_263_residues
TISVALNQSVCQFDPDADERPAVALLLDIEQNDVEQPVHQHRKGQLVMALRGGVVCEVPKAMWMVPPHHAVWIPGGMPHS
NRATDNARIGFLFVEPGATLMPETCCTIAINPMVRELILYLAGQPPAYPHESPTARVAAVVLEQLATAPIERLHLPVSDH
PKIRHITNAWTADPADRRTLAQWASQLAMSDRSLARLVQRETGLSFGRWRQQWHLIVALRQLTEGAAVQQVAGNLGYDSV
TAFITMFKKMLGKPPAQYFASLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=250, Percent_Identity=52, Blast_Score=255, Evalue=2e-69,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29254; Mature: 29123

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISVALNQSVCQFDPDADERPAVALLLDIEQNDVEQPVHQHRKGQLVMALRGGVVCEVP
CEEEEEECCCHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCEEEECC
KAMWMVPPHHAVWIPGGMPHSNRATDNARIGFLFVEPGATLMPETCCTIAINPMVRELIL
HHHEECCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHEEECHHHHHHHH
YLAGQPPAYPHESPTARVAAVVLEQLATAPIERLHLPVSDHPKIRHITNAWTADPADRRT
HHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCEEECCCCCCCCHHHHH
LAQWASQLAMSDRSLARLVQRETGLSFGRWRQQWHLIVALRQLTEGAAVQQVAGNLGYDS
HHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
VTAFITMFKKMLGKPPAQYFASLR
HHHHHHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure 
TISVALNQSVCQFDPDADERPAVALLLDIEQNDVEQPVHQHRKGQLVMALRGGVVCEVP
EEEEEECCCHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCEEEECC
KAMWMVPPHHAVWIPGGMPHSNRATDNARIGFLFVEPGATLMPETCCTIAINPMVRELIL
HHHEECCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHEEECHHHHHHHH
YLAGQPPAYPHESPTARVAAVVLEQLATAPIERLHLPVSDHPKIRHITNAWTADPADRRT
HHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCEEECCCCCCCCHHHHH
LAQWASQLAMSDRSLARLVQRETGLSFGRWRQQWHLIVALRQLTEGAAVQQVAGNLGYDS
HHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
VTAFITMFKKMLGKPPAQYFASLR
HHHHHHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]