Click here to switch to the map view.

The map label for this gene is 21242968

Identifier: 21242968

GI number: 21242968

Start: 2616288

End: 2616935

Strand: Reverse

Name: 21242968

Synonym: XAC2233

Alternate gene names: NA

Gene position: 2616935-2616288 (Counterclockwise)

Preceding gene: 21242969

Following gene: 21242967

Centisome position: 50.56

GC content: 62.19

Gene sequence:

>648_bases
TTGAAACGTCAACTTAGAGTAAAGGAGCTATCCATGAAGATCATCCTTATCGGCGCCACGGGCACCATCGGCAAAGCGAT
TGACGCCGAACTTGGTCAGCGCCACGAAATCATCCGCGCCGGCCGCAACAGCGGCGATGTGAAGGTCGATATCGCCGATC
CCGATTCGATTCGCCGGTTTTACGCGGAAGTCGGTTCCTTTGATGCGCTGGTCAGCGCGACGGGCAAGGTCCACTTCGGG
CCGCTGGAGGACTTCACGGCCGAACAACTCGAGATCGGCCTGCGCAACAAATTGCTGGGCCAGGTCAACCTCGTGCTCTT
CGGCCTGAAGCAGGTGCGCGATGGGGGGTCGTTCACGCTCACCAGCGGGCTGCTCAACGATGACCCGATTCGCCAAGGCG
CGAGCGCGGCGTTGGTCAATGGCGGCATCGACGGCTTTATCCGCAGCGCCGCCATCGAGTTGCCGCGTGGGATTCGCATC
AATGCCGTCAGTCCGACCGTGATCGAGGAGGCGCTGCCTTCTTACGCGCCGTTTTTCCGTGGCGTCAAAGCCGCACCCGC
CGCTGATGCGGCGCTGGGCTACGCCAAGAGCGTAGAGGGCGCGCAGACCGGCCGCATCTATCGGATCGGTTGGACGCGCG
ACAACTGA

Upstream 100 bases:

>100_bases
GGCGTATGCGTCGTCCTCGCTCTGATCGCCGTCTTCATGGGCCTGCTGGCAGGCCGGGACCGCCAGATCGGCCGCGCATG
ATGCCAAGCCAGAATCCATT

Downstream 100 bases:

>100_bases
AATCCGTCTGCCCATGCCAAAACGCGCTCGGTATGCCGAGCCCCGAAAGAGGCGTGGCTTCATCCTTTATGGCGCGGTTT
GGCCGGTCACTTGGACGATC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: Short-Chain Dehydrogenase/Reductase SDR; Dehydrogenase; Short-Chain Dehydrogenase; Oxidoreductase; 3-Oxoacyl-[Acyl-Carrier-Protein] Reductase; NAD-Dependent Epimerase/Dehydratase; Aklaviketone Reductase; 2-Hydroxycyclohexanecarboxyl-CoA Dehydrogenase; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; DTDP-4-Dehydrorhamnose Reductase; Short Chain Dehydrogenase Family Protein; Dehydrogenases With Different Specificities; Oxidoreductase Short Chain Dehydrogenase/Reductase Family

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKRQLRVKELSMKIILIGATGTIGKAIDAELGQRHEIIRAGRNSGDVKVDIADPDSIRRFYAEVGSFDALVSATGKVHFG
PLEDFTAEQLEIGLRNKLLGQVNLVLFGLKQVRDGGSFTLTSGLLNDDPIRQGASAALVNGGIDGFIRSAAIELPRGIRI
NAVSPTVIEEALPSYAPFFRGVKAAPAADAALGYAKSVEGAQTGRIYRIGWTRDN

Sequences:

>Translated_215_residues
MKRQLRVKELSMKIILIGATGTIGKAIDAELGQRHEIIRAGRNSGDVKVDIADPDSIRRFYAEVGSFDALVSATGKVHFG
PLEDFTAEQLEIGLRNKLLGQVNLVLFGLKQVRDGGSFTLTSGLLNDDPIRQGASAALVNGGIDGFIRSAAIELPRGIRI
NAVSPTVIEEALPSYAPFFRGVKAAPAADAALGYAKSVEGAQTGRIYRIGWTRDN
>Mature_215_residues
MKRQLRVKELSMKIILIGATGTIGKAIDAELGQRHEIIRAGRNSGDVKVDIADPDSIRRFYAEVGSFDALVSATGKVHFG
PLEDFTAEQLEIGLRNKLLGQVNLVLFGLKQVRDGGSFTLTSGLLNDDPIRQGASAALVNGGIDGFIRSAAIELPRGIRI
NAVSPTVIEEALPSYAPFFRGVKAAPAADAALGYAKSVEGAQTGRIYRIGWTRDN

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23004; Mature: 23004

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRQLRVKELSMKIILIGATGTIGKAIDAELGQRHEIIRAGRNSGDVKVDIADPDSIRRF
CCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHH
YAEVGSFDALVSATGKVHFGPLEDFTAEQLEIGLRNKLLGQVNLVLFGLKQVRDGGSFTL
HHHHCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
TSGLLNDDPIRQGASAALVNGGIDGFIRSAAIELPRGIRINAVSPTVIEEALPSYAPFFR
ECCCCCCCCHHCCCCEEEECCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHC
GVKAAPAADAALGYAKSVEGAQTGRIYRIGWTRDN
CCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MKRQLRVKELSMKIILIGATGTIGKAIDAELGQRHEIIRAGRNSGDVKVDIADPDSIRRF
CCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHH
YAEVGSFDALVSATGKVHFGPLEDFTAEQLEIGLRNKLLGQVNLVLFGLKQVRDGGSFTL
HHHHCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
TSGLLNDDPIRQGASAALVNGGIDGFIRSAAIELPRGIRINAVSPTVIEEALPSYAPFFR
ECCCCCCCCHHCCCCEEEECCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHC
GVKAAPAADAALGYAKSVEGAQTGRIYRIGWTRDN
CCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA