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The map label for this gene is radC [C]

Identifier: 21242914

GI number: 21242914

Start: 2550047

End: 2550556

Strand: Reverse

Name: radC [C]

Synonym: XAC2179

Alternate gene names: 21242914

Gene position: 2550556-2550047 (Counterclockwise)

Preceding gene: 21242916

Following gene: 21242912

Centisome position: 49.28

GC content: 60.59

Gene sequence:

>510_bases
ATGTCGCAACTGTCCTTTTCCTCTTTCGATTCGCTGCTGCACGTGCGCGATACCCAAGGCCGCTATCGGCTGGCCTCTGT
CGAACAGATCCTTGAAGCGGCACGCGAGGCTATCGACCAGAAGATGCAGCGCGGTACCGAGTTCAGTTCACCAGCCGTGG
TGAAGGAGTACCTACGCGCCAAACTGGCAGGCTTCGAGCATGAGGTGTTCGCCGTCCTGTTCCTCGACACACAGCATCGC
TTGATCGAGTACACCGAGATGTTCCGCGGCACCATCGACAGCGCATCCGTGCATCCGCGCGAGGTCGTCAAGGAGGCGCT
GCGGACCAATGCAGCGGCGGTGATCCTGGCACACAACCACCCCAGTGGGCATCCAGAGCCCAGCACTGCGGACAGGGCGC
TGACGCGGCAGCTTAAGGCAGCGTTGGAATTAGTGGACGTGCGCACGCTGGACCACATCATCGTCGCTGGCGGTGCTAAT
ACATCATTTGCAGAGCGCGGTCTGCTCTGA

Upstream 100 bases:

>100_bases
ACGCTTGCGGCCTGTCGGCCGTCTGCGATCCCTGACTGCTTGCGCTGCACCGTGAGGCGCCGGTTCCGGGCAATTCCGCC
CGAGCAACCGAAGCACGATC

Downstream 100 bases:

>100_bases
CTTCGGGGGCTTCGGCCCCCTTTTTGCTGCGCCAGGTAGCCCAGGCACGGCACTGCGGGCTGCTGCGCTACCAACTGAAG
TGCCGCTGCTTCAACACGGC

Product: RadC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSQLSFSSFDSLLHVRDTQGRYRLASVEQILEAAREAIDQKMQRGTEFSSPAVVKEYLRAKLAGFEHEVFAVLFLDTQHR
LIEYTEMFRGTIDSASVHPREVVKEALRTNAAAVILAHNHPSGHPEPSTADRALTRQLKAALELVDVRTLDHIIVAGGAN
TSFAERGLL

Sequences:

>Translated_169_residues
MSQLSFSSFDSLLHVRDTQGRYRLASVEQILEAAREAIDQKMQRGTEFSSPAVVKEYLRAKLAGFEHEVFAVLFLDTQHR
LIEYTEMFRGTIDSASVHPREVVKEALRTNAAAVILAHNHPSGHPEPSTADRALTRQLKAALELVDVRTLDHIIVAGGAN
TSFAERGLL
>Mature_168_residues
SQLSFSSFDSLLHVRDTQGRYRLASVEQILEAAREAIDQKMQRGTEFSSPAVVKEYLRAKLAGFEHEVFAVLFLDTQHRL
IEYTEMFRGTIDSASVHPREVVKEALRTNAAAVILAHNHPSGHPEPSTADRALTRQLKAALELVDVRTLDHIIVAGGANT
SFAERGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=150, Percent_Identity=43.3333333333333, Blast_Score=148, Evalue=2e-37,
Organism=Escherichia coli, GI2367100, Length=142, Percent_Identity=51.4084507042254, Blast_Score=140, Evalue=3e-35,
Organism=Escherichia coli, GI1788997, Length=125, Percent_Identity=53.6, Blast_Score=137, Evalue=4e-34,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=48.936170212766, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 18780; Mature: 18648

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLSFSSFDSLLHVRDTQGRYRLASVEQILEAAREAIDQKMQRGTEFSSPAVVKEYLRA
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
KLAGFEHEVFAVLFLDTQHRLIEYTEMFRGTIDSASVHPREVVKEALRTNAAAVILAHNH
HHCCCCHHHEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
PSGHPEPSTADRALTRQLKAALELVDVRTLDHIIVAGGANTSFAERGLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHCCCC
>Mature Secondary Structure 
SQLSFSSFDSLLHVRDTQGRYRLASVEQILEAAREAIDQKMQRGTEFSSPAVVKEYLRA
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
KLAGFEHEVFAVLFLDTQHRLIEYTEMFRGTIDSASVHPREVVKEALRTNAAAVILAHNH
HHCCCCHHHEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
PSGHPEPSTADRALTRQLKAALELVDVRTLDHIIVAGGANTSFAERGLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]