| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is acrR [C]
Identifier: 21242758
GI number: 21242758
Start: 2357615
End: 2358247
Strand: Reverse
Name: acrR [C]
Synonym: XAC2014
Alternate gene names: 21242758
Gene position: 2358247-2357615 (Counterclockwise)
Preceding gene: 21242767
Following gene: 77748627
Centisome position: 45.57
GC content: 65.24
Gene sequence:
>633_bases ATGCCCAAGCCCGCCCACTTCTCCACCAAGGACCGCATTCTCGGTGCGGCCGAGGAGCTGTTCGCCCAGCACGGGTTTGC AGGCACGTCGCTGCGCCAGCTGACCACGCAGGCCGACGTCAATATCGCCGCGGTCAACTATCACTTCGGCTCCAAGGAAA ACCTGGTCAACGAGGTGTTCCGCCGGCGCATGGACGAAATGACCGCAGCGCGCCTGCAGCAGCTGGAAACGGCGAAGAAG TCGCAGCCCGGCGAGCTGACGGCCGTGCTCGCTGCCTTCGTCGAGCCGGCGTTGGCGATGGCGCAGGACCGCCAGAACGG CGGCGCGTTCGTACGCGTGATCGCACGCGCGTATGCCGAAAAGAACGACAACCTGCGCAAGTTCCTGTCCGACCACTACG GGCATGTCCTGCGCGAATTCGGCAAGGCCATTGCCGGCTGCGTGCCGGGCCTGAGCAAGGAAGAGCTGTACTGGCGGCTG GACTTTCTTGCCGGCGCACTGACCTATGCCATGGCCGACTTCGGACTCATCAAGCGGCCTGCGGGCGTCAGCGAGGCCGA CCACCGCGCGCGCGCGGCGCGAGAACTCATTCGTTTCGCGGAACCCGGTTTCCGTGCTCATTCCACACCGTAA
Upstream 100 bases:
>100_bases TTGCACACCGCCTCCTGAATCGTGCTGCGTTGCGACATGACCTGCCAGCGGGCGAGCCCGTAGACTCAAACAATCGTTTG ATTGAGTCCTGTCTTCGCGC
Downstream 100 bases:
>100_bases ACGTTCCACAAGAGGCCTATCGCTATGTCCAACCCGTTGCTAGTCCGTCGTGCCGCCGTGCTCGGTGCCGGCGTCATGGG CGCGCAGATCGCCGCCCACC
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; Transcriptional Regulator PsrA; TetR Family Regulatory Protein; Regulatory Protein Tetr; Transcription Regulator Protein; PsrA Protein; TetR Family Transcription Factor; TRANSCRIPTIONal REGULATOR TetR Family; Transcriptional Regulator Transcription Regulator Protein; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MPKPAHFSTKDRILGAAEELFAQHGFAGTSLRQLTTQADVNIAAVNYHFGSKENLVNEVFRRRMDEMTAARLQQLETAKK SQPGELTAVLAAFVEPALAMAQDRQNGGAFVRVIARAYAEKNDNLRKFLSDHYGHVLREFGKAIAGCVPGLSKEELYWRL DFLAGALTYAMADFGLIKRPAGVSEADHRARAARELIRFAEPGFRAHSTP
Sequences:
>Translated_210_residues MPKPAHFSTKDRILGAAEELFAQHGFAGTSLRQLTTQADVNIAAVNYHFGSKENLVNEVFRRRMDEMTAARLQQLETAKK SQPGELTAVLAAFVEPALAMAQDRQNGGAFVRVIARAYAEKNDNLRKFLSDHYGHVLREFGKAIAGCVPGLSKEELYWRL DFLAGALTYAMADFGLIKRPAGVSEADHRARAARELIRFAEPGFRAHSTP >Mature_209_residues PKPAHFSTKDRILGAAEELFAQHGFAGTSLRQLTTQADVNIAAVNYHFGSKENLVNEVFRRRMDEMTAARLQQLETAKKS QPGELTAVLAAFVEPALAMAQDRQNGGAFVRVIARAYAEKNDNLRKFLSDHYGHVLREFGKAIAGCVPGLSKEELYWRLD FLAGALTYAMADFGLIKRPAGVSEADHRARAARELIRFAEPGFRAHSTP
Specific function: Potential Regulator Protein For The Acrab Genes. [C]
COG id: COG1309
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23231; Mature: 23100
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKPAHFSTKDRILGAAEELFAQHGFAGTSLRQLTTQADVNIAAVNYHFGSKENLVNEVF CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH RRRMDEMTAARLQQLETAKKSQPGELTAVLAAFVEPALAMAQDRQNGGAFVRVIARAYAE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH KNDNLRKFLSDHYGHVLREFGKAIAGCVPGLSKEELYWRLDFLAGALTYAMADFGLIKRP CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC AGVSEADHRARAARELIRFAEPGFRAHSTP CCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PKPAHFSTKDRILGAAEELFAQHGFAGTSLRQLTTQADVNIAAVNYHFGSKENLVNEVF CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH RRRMDEMTAARLQQLETAKKSQPGELTAVLAAFVEPALAMAQDRQNGGAFVRVIARAYAE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH KNDNLRKFLSDHYGHVLREFGKAIAGCVPGLSKEELYWRLDFLAGALTYAMADFGLIKRP CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC AGVSEADHRARAARELIRFAEPGFRAHSTP CCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA