| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is trxB [H]
Identifier: 21242749
GI number: 21242749
Start: 2340636
End: 2341604
Strand: Reverse
Name: trxB [H]
Synonym: XAC2005
Alternate gene names: 21242749
Gene position: 2341604-2340636 (Counterclockwise)
Preceding gene: 77748626
Following gene: 21242748
Centisome position: 45.24
GC content: 65.63
Gene sequence:
>969_bases ATGAGCGCCTCTTCTGCCAGCCCCGCCAAGCATTCCCGCCTGCTGATCCTGGGCTCCGGCCCGGCCGGCTGGACCGCCGC GGTCTATGCCGCCCGCGCCAACCTCAAGCCGGTGGTCATCACCGGGTTGCAACAAGGCGGCCAGCTGATGACCACGACCG AAGTGGACAACTGGCCGGGCGACCCCCATGGCCTGATGGGCCCGGACCTGATGAGCCGCATGCAGGCGCATGCCGAGCGC TTCGAGACCGAGGTCATCTTCGACCATATCCACACGGCAGACCTGTCGCAACGCCCGTTCCGGCTGATCGGCGACGGTGC CGAGTACACCTGCGACGCACTGATCATCGCCACCGGCGCCACCGCCAAGTACCTGGGCATCCCCACCGAAGAAGCCTTCA AGGGCCGCGGCGTCTCCGCCTGCGCCACCTGCGACGGCTTCTTCTACAAGGACCAGGATGTGGTGGTGGTCGGCGGCGGC AACACCGCGGTCGAAGAGGCGCTGTACCTGTCCAACATCGCCCGCAAGGTCTACCTGGTACATCGCCGCGACACCCTGCG TGCGGAAAAGATCATGCAGGACAAGCTGTTCGCCAAGGTGGCCGCCGGCAAGATCGAGACCGTCTGGCACCATGCCATCG ACGAAGTATTGGGCAACGATGCCGGGGTCACCGGCGTGAGGGTCAAGTCCACCATCGACGGCAGCACCCGCGATATCGAT GCGCATGGTTTCTTCGTGGCGATCGGCCATCACCCGAATACGCAGTTGTTCGATGGCCAGCTGGCAATGAACAACGGCTA CCTGGAGATTCGTTCCGGCCTGAACGGCGCGGCGACCGAAACCTCGGTGGCCGGCGTGTTCGCCGCCGGCGACGTGGCCG ACCAGCATTACCGTCAGGCCATCACCTCGGCCGGCTTCGGCTGCATGGCCGCGCTGGATGCCGAACGCTTCCTCGACAAG AGCGCCTGA
Upstream 100 bases:
>100_bases CGCGCCGCCTTGATTCACCAGGTGGGGACCGCCACTCTATGCCGCCACGGGGACGCGAATGACTTCGCCTTCCCCACCAA TTCCTAGATCGCGAGTATAC
Downstream 100 bases:
>100_bases GATGGCGCCTGATTGCCGGCCGCGCCACGCGGCCAGCATCGCCAAAGGGCTGCCGGCATGGGCATAACCGCCCGCTGGTG TCGCCAGCTGGACGAGTTGC
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MSASSASPAKHSRLLILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPGDPHGLMGPDLMSRMQAHAER FETEVIFDHIHTADLSQRPFRLIGDGAEYTCDALIIATGATAKYLGIPTEEAFKGRGVSACATCDGFFYKDQDVVVVGGG NTAVEEALYLSNIARKVYLVHRRDTLRAEKIMQDKLFAKVAAGKIETVWHHAIDEVLGNDAGVTGVRVKSTIDGSTRDID AHGFFVAIGHHPNTQLFDGQLAMNNGYLEIRSGLNGAATETSVAGVFAAGDVADQHYRQAITSAGFGCMAALDAERFLDK SA
Sequences:
>Translated_322_residues MSASSASPAKHSRLLILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPGDPHGLMGPDLMSRMQAHAER FETEVIFDHIHTADLSQRPFRLIGDGAEYTCDALIIATGATAKYLGIPTEEAFKGRGVSACATCDGFFYKDQDVVVVGGG NTAVEEALYLSNIARKVYLVHRRDTLRAEKIMQDKLFAKVAAGKIETVWHHAIDEVLGNDAGVTGVRVKSTIDGSTRDID AHGFFVAIGHHPNTQLFDGQLAMNNGYLEIRSGLNGAATETSVAGVFAAGDVADQHYRQAITSAGFGCMAALDAERFLDK SA >Mature_321_residues SASSASPAKHSRLLILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPGDPHGLMGPDLMSRMQAHAERF ETEVIFDHIHTADLSQRPFRLIGDGAEYTCDALIIATGATAKYLGIPTEEAFKGRGVSACATCDGFFYKDQDVVVVGGGN TAVEEALYLSNIARKVYLVHRRDTLRAEKIMQDKLFAKVAAGKIETVWHHAIDEVLGNDAGVTGVRVKSTIDGSTRDIDA HGFFVAIGHHPNTQLFDGQLAMNNGYLEIRSGLNGAATETSVAGVFAAGDVADQHYRQAITSAGFGCMAALDAERFLDKS A
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=311, Percent_Identity=67.524115755627, Blast_Score=446, Evalue=1e-127, Organism=Escherichia coli, GI87081763, Length=323, Percent_Identity=31.5789473684211, Blast_Score=139, Evalue=3e-34, Organism=Saccharomyces cerevisiae, GI6320560, Length=320, Percent_Identity=43.4375, Blast_Score=262, Evalue=7e-71, Organism=Saccharomyces cerevisiae, GI6321898, Length=330, Percent_Identity=41.8181818181818, Blast_Score=251, Evalue=9e-68,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 34324; Mature: 34193
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: PS00573 PYRIDINE_REDOX_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASSASPAKHSRLLILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPG CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCC DPHGLMGPDLMSRMQAHAERFETEVIFDHIHTADLSQRPFRLIGDGAEYTCDALIIATGA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEEEECC TAKYLGIPTEEAFKGRGVSACATCDGFFYKDQDVVVVGGGNTAVEEALYLSNIARKVYLV CEEEECCCCHHHHCCCCCEEEEECCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHEEEE HRRDTLRAEKIMQDKLFAKVAAGKIETVWHHAIDEVLGNDAGVTGVRVKSTIDGSTRDID ECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEC AHGFFVAIGHHPNTQLFDGQLAMNNGYLEIRSGLNGAATETSVAGVFAAGDVADQHYRQA CCEEEEEECCCCCCEEECCEEEECCCEEEEECCCCCCCCCHHHHEEEEECCHHHHHHHHH ITSAGFGCMAALDAERFLDKSA HHHCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure SASSASPAKHSRLLILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPG CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCC DPHGLMGPDLMSRMQAHAERFETEVIFDHIHTADLSQRPFRLIGDGAEYTCDALIIATGA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEEEECC TAKYLGIPTEEAFKGRGVSACATCDGFFYKDQDVVVVGGGNTAVEEALYLSNIARKVYLV CEEEECCCCHHHHCCCCCEEEEECCCCEECCCCEEEECCCCHHHHHHHHHHHHHHHEEEE HRRDTLRAEKIMQDKLFAKVAAGKIETVWHHAIDEVLGNDAGVTGVRVKSTIDGSTRDID ECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEC AHGFFVAIGHHPNTQLFDGQLAMNNGYLEIRSGLNGAATETSVAGVFAAGDVADQHYRQA CCEEEEEECCCCCCEEECCEEEECCCEEEEECCCCCCCCCHHHHEEEEECCHHHHHHHHH ITSAGFGCMAALDAERFLDKSA HHHCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]