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The map label for this gene is flgD [H]

Identifier: 21242728

GI number: 21242728

Start: 2317174

End: 2317839

Strand: Reverse

Name: flgD [H]

Synonym: XAC1984

Alternate gene names: 21242728

Gene position: 2317839-2317174 (Counterclockwise)

Preceding gene: 21242729

Following gene: 21242727

Centisome position: 44.78

GC content: 61.56

Gene sequence:

>666_bases
ATGAGCACGATCGGCAGCGATCTCTACAAAAGCCTTGGCCTGAGTACCAGCAGCACCGTCGCCAAGAAGGAGGATGCACT
CGGCCAGGCCGACTTCCTCAAATTGATGACCGAACAGCTACAGCATCAAGACCCGCTCAAACCGATGGAAAACAGCGCGT
TTCTCGGGCAATTGGCGCAGTTTTCCACCGTGCAGGGCATTGGCGACCTCAATACCAAGGTCAGCAACTTCTCCGACTCG
ATGAACAGCGACCAGGTGCTCAAGGGCGCAGCGCTGGTTGGCCACAACGTGCTGGTGCCCTCGGCGCAGGTCGCGATCGA
TGCCACCGGCTCGGCCAAGGGCGTGGTCGCCGCGACCTCGGCCGGTTTCGTCAATTTCGAAATCACCGACGCCAACGGCA
CCTTCGTCAAACAGATCAGCGTGCCGGCCAGCGCTGCCGGCGAGGTGTCGTTTGACTGGGATGGCACCGACGCAAACGGC
AATCGCATGGCGGCCGGCAAGTACGGCGTGACTGCCACCCAGACCGACACCGCCGGCTCCAAAAGCAAGTTGTCTACCTA
TGTCCAGGCACCGGTGGACAGCGTCACGATCGGCTCGGACGGTCTGTATCTCAACCTGACCGGGCTAGGCACTTCCCCGC
TCGCCAACGTGCTCCGCGTCAGCTGA

Upstream 100 bases:

>100_bases
GGCGTGGAAATGCTCAATACCGCCAAGGAACTGGCGCTCGCGACCCTCACCATGGGTCGCTGACCCTTCCTAGCTGACCC
TCACCAACGGAACACTCCAC

Downstream 100 bases:

>100_bases
GCCGGCAACCAACACCTAAAGGAACTCGTCCATGGGCTTCAATACCTCTTTGTCCGGCATCAACGCAGCCAATGCCGATC
TGAACGTCACCTCCAACAAC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSTIGSDLYKSLGLSTSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS
MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGTFVKQISVPASAAGEVSFDWDGTDANG
NRMAAGKYGVTATQTDTAGSKSKLSTYVQAPVDSVTIGSDGLYLNLTGLGTSPLANVLRVS

Sequences:

>Translated_221_residues
MSTIGSDLYKSLGLSTSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS
MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGTFVKQISVPASAAGEVSFDWDGTDANG
NRMAAGKYGVTATQTDTAGSKSKLSTYVQAPVDSVTIGSDGLYLNLTGLGTSPLANVLRVS
>Mature_220_residues
STIGSDLYKSLGLSTSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDSM
NSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGTFVKQISVPASAAGEVSFDWDGTDANGN
RMAAGKYGVTATQTDTAGSKSKLSTYVQAPVDSVTIGSDGLYLNLTGLGTSPLANVLRVS

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=201, Percent_Identity=36.318407960199, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 22731; Mature: 22599

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIGSDLYKSLGLSTSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQ
CCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
FSTVQGIGDLNTKVSNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATS
HHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEEECCCCCCCEEEEEC
AGFVNFEITDANGTFVKQISVPASAAGEVSFDWDGTDANGNRMAAGKYGVTATQTDTAGS
CCEEEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCCEEECCCCCCEEECCCCCCC
KSKLSTYVQAPVDSVTIGSDGLYLNLTGLGTSPLANVLRVS
HHHHHHHHHCCCCEEEECCCCEEEEEECCCCHHHHHHHCCC
>Mature Secondary Structure 
STIGSDLYKSLGLSTSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQ
CCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
FSTVQGIGDLNTKVSNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATS
HHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEEECCCCCCCEEEEEC
AGFVNFEITDANGTFVKQISVPASAAGEVSFDWDGTDANGNRMAAGKYGVTATQTDTAGS
CCEEEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCCEEECCCCCCEEECCCCCCC
KSKLSTYVQAPVDSVTIGSDGLYLNLTGLGTSPLANVLRVS
HHHHHHHHHCCCCEEEECCCCEEEEEECCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]