BacMap

Definition	Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome.
Accession	NC_003919
Length	5,175,554

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The map label for this gene is fabG [H]

Identifier: 21242706

GI number: 21242706

Start: 2294538

End: 2295224

Strand: Reverse

Name: fabG [H]

Synonym: XAC1962

Alternate gene names: 21242706

Gene position: 2295224-2294538 (Counterclockwise)

Preceding gene: 21242707

Following gene: 21242705

Centisome position: 44.35

GC content: 63.76

Gene sequence:

>687_bases
GTGACGGGAGCGTCGTCGGGGCTGGGCCGGCAAATCGCCATCGCCTGCGCACAGCGAGGTGCCCGCATCGTTCTCGCCGG
CCGCGACAAAGACCGTCTCGCGCAGACCCAGGCGCAGCTGCAGGGCACGGGCCACGTTAGCGTGCTCGGCGATCTCACGG
GTACCGCCGATCGCGAAGCACTGGCTGCTGCAGCGGGTGCGACGTTACATGGTCTGGTGCACTGCGCTGGCATGCAAAAG
CATTGCCCGATCCGGCAGTTGACCGAAGCGGCGATGACCGAGATGTACACGGTCAATTTTCTCGCTCCTGTGATGCTGAC
GCAGCGCCTGCTGCACGCAAATGCCATCGCTTCACAGGGATCGATCGTGTTCATGCTCTCCACTGCCGCACACCTCGGCA
CGCGCGGCGTAGGGCCATATTCAGCAATGAAGGCGGGCCTCATCGGCATCATCAAATGCCTGGCGCTAGAACAAGCCAAA
CGCAGGATTCGGGTCAACGGCATTTCTCCATCCGCTGTGGCCACGCCGATGTGGGGCGCAGATCAACTCGATGCGCAGAA
GGCACGGCATCCTCTAGGCCTGGGCGAGCCGCAGGACGTGGCCAACGCCGCGATCTATCTGCTAGCCGATGCCAGCCGCT
GGGTCACCGGGACTAGCCTGGTGATGGACGGCGGCTCGATCCTATGA

Upstream 100 bases:

>100_bases
ACTATTTCGTGGTGGATGGTGGCCTCACCGTGCCGATGGACATCTACGCATGAACACGCCGGCTCACAGTGCGTTTTCGC
TCAACGGAAAGACGATCCTG

Downstream 100 bases:

>100_bases
TCCACCCGGTGTTGATCGTTGGTGCCGGCGGATGGGGGCGCGAGGTCCTGGCGCAGATGCAGGGCGATCCAGCATGCGGA
ACGCAGTGGTATCCGGTGGG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTGASSGLGRQIAIACAQRGARIVLAGRDKDRLAQTQAQLQGTGHVSVLGDLTGTADREALAAAAGATLHGLVHCAGMQK
HCPIRQLTEAAMTEMYTVNFLAPVMLTQRLLHANAIASQGSIVFMLSTAAHLGTRGVGPYSAMKAGLIGIIKCLALEQAK
RRIRVNGISPSAVATPMWGADQLDAQKARHPLGLGEPQDVANAAIYLLADASRWVTGTSLVMDGGSIL

Sequences:

>Translated_228_residues
MTGASSGLGRQIAIACAQRGARIVLAGRDKDRLAQTQAQLQGTGHVSVLGDLTGTADREALAAAAGATLHGLVHCAGMQK
HCPIRQLTEAAMTEMYTVNFLAPVMLTQRLLHANAIASQGSIVFMLSTAAHLGTRGVGPYSAMKAGLIGIIKCLALEQAK
RRIRVNGISPSAVATPMWGADQLDAQKARHPLGLGEPQDVANAAIYLLADASRWVTGTSLVMDGGSIL
>Mature_227_residues
TGASSGLGRQIAIACAQRGARIVLAGRDKDRLAQTQAQLQGTGHVSVLGDLTGTADREALAAAAGATLHGLVHCAGMQKH
CPIRQLTEAAMTEMYTVNFLAPVMLTQRLLHANAIASQGSIVFMLSTAAHLGTRGVGPYSAMKAGLIGIIKCLALEQAKR
RIRVNGISPSAVATPMWGADQLDAQKARHPLGLGEPQDVANAAIYLLADASRWVTGTSLVMDGGSIL

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=240, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI40254992, Length=230, Percent_Identity=34.3478260869565, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI15277342, Length=245, Percent_Identity=29.7959183673469, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI7705925, Length=235, Percent_Identity=32.3404255319149, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI126723750, Length=245, Percent_Identity=28.1632653061224, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=30.6122448979592, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI4503817, Length=238, Percent_Identity=25.6302521008403, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI126723191, Length=174, Percent_Identity=34.4827586206897, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI59889578, Length=232, Percent_Identity=28.8793103448276, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=32.4468085106383, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=24.1106719367589, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1787526, Length=229, Percent_Identity=31.8777292576419, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787335, Length=232, Percent_Identity=30.6034482758621, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786812, Length=242, Percent_Identity=29.7520661157025, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1790717, Length=239, Percent_Identity=26.3598326359833, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082160, Length=240, Percent_Identity=30, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787905, Length=237, Percent_Identity=29.1139240506329, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789208, Length=237, Percent_Identity=28.6919831223629, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082100, Length=246, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786701, Length=227, Percent_Identity=27.3127753303965, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367175, Length=242, Percent_Identity=29.3388429752066, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789378, Length=234, Percent_Identity=26.9230769230769, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=234, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI115534694, Length=235, Percent_Identity=29.7872340425532, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=234, Percent_Identity=30.7692307692308, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17560150, Length=254, Percent_Identity=31.1023622047244, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=254, Percent_Identity=29.9212598425197, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=30.4182509505703, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=29.5081967213115, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=240, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=244, Percent_Identity=29.0983606557377, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=243, Percent_Identity=29.2181069958848, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=30.859375, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=257, Percent_Identity=30.3501945525292, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=29.8449612403101, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=27.4809160305344, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=29.1828793774319, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=27.1317829457364, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=257, Percent_Identity=26.0700389105058, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=151, Percent_Identity=31.7880794701987, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24643142, Length=233, Percent_Identity=35.1931330472103, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI21357041, Length=242, Percent_Identity=30.5785123966942, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=30.327868852459, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24644339, Length=241, Percent_Identity=29.4605809128631, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24639444, Length=237, Percent_Identity=27.8481012658228, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI23397609, Length=238, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356301, Length=229, Percent_Identity=27.0742358078603, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21355319, Length=238, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 23686; Mature: 23555

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00962 RIBOSOMAL_S2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGASSGLGRQIAIACAQRGARIVLAGRDKDRLAQTQAQLQGTGHVSVLGDLTGTADREA
CCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
LAAAAGATLHGLVHCAGMQKHCPIRQLTEAAMTEMYTVNFLAPVMLTQRLLHANAIASQG
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SIVFMLSTAAHLGTRGVGPYSAMKAGLIGIIKCLALEQAKRRIRVNGISPSAVATPMWGA
CEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHCCCCCCC
DQLDAQKARHPLGLGEPQDVANAAIYLLADASRWVTGTSLVMDGGSIL
CHHHHHHHCCCCCCCCHHHHHHEEEEEEECCCCCCCCCEEEECCCCCC
>Mature Secondary Structure 
TGASSGLGRQIAIACAQRGARIVLAGRDKDRLAQTQAQLQGTGHVSVLGDLTGTADREA
CCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
LAAAAGATLHGLVHCAGMQKHCPIRQLTEAAMTEMYTVNFLAPVMLTQRLLHANAIASQG
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SIVFMLSTAAHLGTRGVGPYSAMKAGLIGIIKCLALEQAKRRIRVNGISPSAVATPMWGA
CEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHCCCCCCC
DQLDAQKARHPLGLGEPQDVANAAIYLLADASRWVTGTSLVMDGGSIL
CHHHHHHHCCCCCCCCHHHHHHEEEEEEECCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]