Click here to switch to the map view.

The map label for this gene is fliF [H]

Identifier: 21242698

GI number: 21242698

Start: 2284319

End: 2286043

Strand: Reverse

Name: fliF [H]

Synonym: XAC1954

Alternate gene names: 21242698

Gene position: 2286043-2284319 (Counterclockwise)

Preceding gene: 21242699

Following gene: 21242697

Centisome position: 44.17

GC content: 66.9

Gene sequence:

>1725_bases
ATGGCACTCGCGATCAGCAAAGAAAACATGAACCAGAACGCCGAAAAGGCGGGGCAATGGTTCGACCGTGTCCGCAGCCT
GCAGATCACCCGCAAGCTGACCATGATGGCGATGATCGCCCTGGCGGTCGCGGCCGGTCTGGCGGTGTTCTTCTGGTCGC
AGAAGCCTGGCTATCAATCGCTGTACACCGGCCTGGACGAAAAGGGCAATGCCGAAGCGGCCGACCTGCTGCGCACCGCG
CAGATTCCCTACAAGATCGACCAGGGCACCGGCGCCATTTCGGTGCCGCAGGACCGTCTGTACGACGCCCGCCTCAAGCT
GGCCGGCTCCGGCCTGACCGGCAAGGAAACCGGCGGCGGCTTCGAACTGATGGAAAAGGACCCGGGCTTCGGCGTCAGCC
AGTTCGTGGAAAACGCCCGCTACCAGCACGCGCTGGAAACCGAACTCTCGCGCACCATCGGCACCCTGCGCCCGGTGCGC
GAGGCCCGTGTGCATCTGGCCATTCCCAAGCCCAGCGCCTTCACCCGCCAGCGCGATGTGGCCAGCGCCTCGGTGGTGCT
GGAACTACGCGGCGGCCAGGGCCTGGAGCGCAACCAGGTCGATGCCATCGTCAATCTGGTGGCCTCCAGCATTCCGGACA
TGACCCCCGAACGCGTCACCGTGGTCGACCAGAGCGGCCGCATGCTCTCCATCGCCGACCCGAACAGCGATGCGGCGCAG
CACGCTGCCCAGTTCGAACAGGTGCGCCGCCAGGAAAGCTCCTACAACCAGCGCATCCGCGAACTGCTGGAGCCGATGAC
CGGCCCGGGCCGGGTCAATCCGGAAACCAGCGTGGACATGGATTTCTCGGTGGTCGAAGAGGCCCGCGAGCTCTACAACG
GCGAGCCGGCCAAGCTGCGCAGCGAGCAGGTCAGCGACACCAGCACCAGCGCTACCGGCCCGCAGGGCCCTCCGGGCGCC
ACCAGCAATAGCCCCGGCCAGCCGCCGGCACCGGCAGTCGCCGGCGCGCCGGGCACTCCGGCGGCCGCCAACGGCCAGGC
CGCCGCCCCAGCCACGCCCACCGAAAGTTCCAAGAGCGCCACCCGTAACTACGAATTGGACCGAACCTTGCAACACACCC
GCCAGCCGGCCGGTCGCATCAAGCGCGTCTCGGTGGCGGTGCTGCTGGACAACGTCCCGCGCCCGGGCGCCAAGGGCAAG
ATGGTCGAACAGCCGCTCACCGCCGCCGAGCTCACCCGTATCGAAGGCCTGGTCAAGCAGGCAGTGGGTTTCGACGCGGC
ACGCGGCGACACGGTGTCGGTGATGAATGCCCCGTTCGTGCGCGAAGCGGTGGCTGGTGAAGAAGGTCCGAAGTGGTGGG
AAGATCCGCGCGTGCAGAACGGTCTGCGCCTGCTGGTCGGCGCGGTGGTGGTGCTGGCGCTGCTGTTCGGTGTGGTGCGC
CCCACCCTGCGTCAGCTCACCGGCGTGACCGCGGTCAAGGACAAGCAAGGCAAGGCTGGCAAGGATGGCACTCCACAGAG
CGCCGACGTGCGGATGGTCGACGACGATGACGACCTGATGCCCCGCCTGGAAGAAGACACCGCGCAGATCGGTCAGGACA
AAAAGACCCCGATCGCTCTGCCAGACGCCTACGAAGAGCGCATGCGCCTGGCGCGCGAGGCAGTCAAAGCCGATTCAAAA
CGTGTCGCACAAGTCGTGAAGGGATGGGTCGCCAGTGAAGCCTGA

Upstream 100 bases:

>100_bases
CAGTCCCAGGTGGCCTTCCGCGCCACCGTGGAAGTCCGCAACCGTCTCGTCCAGGCTTATCAGGACGTCATGAACATGCC
GCTGTAAAGGTTGACGACAC

Downstream 100 bases:

>100_bases
TACACAACCGATGACCGGAGTACAGCGCGCCGCGGTGCTGTTGCTGTCGCTGGGTGAGAGCGACGCGGCCGAAGTGCTCA
AGCACATGGATCCCAAGGAG

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLRTA
QIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVR
EARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQ
HAAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATGPQGPPGA
TSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGK
MVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVR
PTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSK
RVAQVVKGWVASEA

Sequences:

>Translated_574_residues
MALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLRTA
QIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVR
EARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQ
HAAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATGPQGPPGA
TSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGK
MVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVR
PTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSK
RVAQVVKGWVASEA
>Mature_573_residues
ALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLRTAQ
IPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVRE
ARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQH
AAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVSDTSTSATGPQGPPGAT
SNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKM
VEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVRP
TLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSKR
VAQVVKGWVASEA

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=573, Percent_Identity=33.8568935427574, Blast_Score=278, Evalue=6e-76,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 61741; Mature: 61610

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQS
CCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHH
LYTGLDEKGNAEAADLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGG
HHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCEECCHHHHHHHHHHEECCCCCCCCCCCC
FELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDV
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHH
ASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQ
CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHH
HAAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
SEQVSDTSTSATGPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
TRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQ
HHCCCHHHHHHHHHCHHHHHHHHHHEEHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH
AVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVR
HHCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
PTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIAL
HHHHHHHCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCHHHHHHHHHCCCCCCCCCC
PDAYEERMRLAREAVKADSKRVAQVVKGWVASEA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALAISKENMNQNAEKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQS
CEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHH
LYTGLDEKGNAEAADLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGG
HHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCEECCHHHHHHHHHHEECCCCCCCCCCCC
FELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDV
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHH
ASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQ
CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHH
HAAQFEQVRRQESSYNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
SEQVSDTSTSATGPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
TRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQ
HHCCCHHHHHHHHHCHHHHHHHHHHEEHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH
AVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLFGVVR
HHCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
PTLRQLTGVTAVKDKQGKAGKDGTPQSADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIAL
HHHHHHHCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCHHHHHHHHHCCCCCCCCCC
PDAYEERMRLAREAVKADSKRVAQVVKGWVASEA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8675317; 10984043 [H]