Click here to switch to the map view.

The map label for this gene is fliN [H]

Identifier: 21242690

GI number: 21242690

Start: 2277508

End: 2277978

Strand: Reverse

Name: fliN [H]

Synonym: XAC1946

Alternate gene names: 21242690

Gene position: 2277978-2277508 (Counterclockwise)

Preceding gene: 21242691

Following gene: 21242689

Centisome position: 44.01

GC content: 65.82

Gene sequence:

>471_bases
GTGCGTGGAAGACATCCCGTTATTCACCGGCGAATTCGGCGTTTCCAATGGCAACAACGCCGTCAAGATCACCGCCGTAC
GCCCGCCCGGCGTGCAAGCCCCACGCGCCGTTCCCTCCCAGGACTCCAGCAAATGATCAACTCCGACACCCTCGACGCCT
CGCCTGCCACCTTCGACAGCCTGCAGGCCGAGCAGGACCAGAACGCGGCCGACCTCAACCTGGACGTGATCCTGGACGTG
CCGGTGACCCTGTCGCTGGAAGTGGGCCGCGCACGCATTCCGATCCGCAACCTGCTGCAGCTCAACCAGGGCTCGGTGGT
GGAACTGGAACGCGGCGCCGGCGAACCGCTGGACGTCTACGTCAACGGCACCCTGATCGCGCACGGCGAAGTGGTCGTCA
TCAACGACCGCTTCGGCATTCGCCTGACCGACGTGGTCAGCCCCAGCGAGCGGATCCGGAGGCTGCGGTGA

Upstream 100 bases:

>100_bases
TGTCCAGCGTGCTGGCCAGCAAGCGCATGAGCCTGCGCCAGCTCACCGGTTTGAAGGTCGGCGACATCCTGCCGATCGAC
CTGCCCGCCCAGGTGCCGCT

Downstream 100 bases:

>100_bases
TCGGCCTGCTGGCCGCTGCCGCGCCGGTCGCGGCCAAGGCGACCCAGGTCGGCGCGCAGGCGCCGTCCTCGCCCAGCCTG
TTTGGCGCAGTCTTTGCATT

Product: flagellar protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MRGRHPVIHRRIRRFQWQQRRQDHRRTPARRASPTRRSLPGLQQMINSDTLDASPATFDSLQAEQDQNAADLNLDVILDV
PVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR

Sequences:

>Translated_156_residues
MRGRHPVIHRRIRRFQWQQRRQDHRRTPARRASPTRRSLPGLQQMINSDTLDASPATFDSLQAEQDQNAADLNLDVILDV
PVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR
>Mature_156_residues
MRGRHPVIHRRIRRFQWQQRRQDHRRTPARRASPTRRSLPGLQQMINSDTLDASPATFDSLQAEQDQNAADLNLDVILDV
PVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=83, Percent_Identity=57.8313253012048, Blast_Score=110, Evalue=3e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 17780; Mature: 17780

Theoretical pI: Translated: 11.80; Mature: 11.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGRHPVIHRRIRRFQWQQRRQDHRRTPARRASPTRRSLPGLQQMINSDTLDASPATFDS
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCCCCCCHHH
LQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVY
HHCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCEEEE
VNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR
ECCEEEECCEEEEEECCCCEEEEECCCCHHHHHCCC
>Mature Secondary Structure
MRGRHPVIHRRIRRFQWQQRRQDHRRTPARRASPTRRSLPGLQQMINSDTLDASPATFDS
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCCCCCCHHH
LQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVY
HHCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCEEEE
VNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR
ECCEEEECCEEEEEECCCCEEEEECCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]