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The map label for this gene is nlpD [C]

Identifier: 21242477

GI number: 21242477

Start: 1987937

End: 1988716

Strand: Direct

Name: nlpD [C]

Synonym: XAC1728

Alternate gene names: 21242477

Gene position: 1987937-1988716 (Clockwise)

Preceding gene: 21242476

Following gene: 21242480

Centisome position: 38.41

GC content: 66.03

Gene sequence:

>780_bases
ATGAGCAAGACGCAGATGAATTCGGCACGCAAGACAGCAGTCATGCTCGCAATCGCCATCGGGCTGACCGCCTGTAGCAG
CGCAACGGTGGTGCGTTCGCCCGGAGCGAGCGGTAGCGGGGCGTCGTCGCGTCCCAGTGCCGCGCCGCGCCCTTCGGTGC
CGCGTCCGGGTGCCACCGTCACCGTGCAGCGCGGCGATACCCTGTACGCGATCTCGCGCCGTACCAATATCACCGCCGCG
GATCTGGCCGCCTGGAATGGCCTGTCTTCGCCGAACACCATCTATCCCGGTCAGACGCTCAAGTTGTATCCGCCCGGTGC
CAGCAAGCCGGGTGGCAGCGCGCCGGTGGCTGGCGGCACTGTGGCGCCGCCGCGCCCTGCTGTGCCGATCGCCGCACCGG
TCAGTAGCGGATTCTCCTGGCGTTGGCCGGCCGATGGCGTCGTGGTGGGCACCTTCGTCACTGGCGAAACCACCAAGCAG
GGCGTAGACATCGCCGGCACCAGCGGCCAGGCCGTACGTGCTGCCGCCGATGGCGTGGTGGTGTATTCGGGCGCCGGCCT
GGTCGGCTACGGCGAACTGATCATCATCAAGCACAACGACCAGTGGCTATCCGCATACGGTCATAACCGCAAGCGCCTGC
TCAACGAAGGCCAGAGCGTCAAAGCGGGGCAGCAAATTGCCGAAATGGGCCGCAGCGGCGCCTCCCGCGACATGTTGCAC
TTCGAGATCCGCTACAACGGCAAGCCGGTCGATCCGTTGCTGTATCTGCCTAAGAAGTGA

Upstream 100 bases:

>100_bases
CCGAAGCGGCGCTGCATCGCTGGATCGAGCCACTGGGCTGGGTTGCAATGGCGGTGCTGGCGGTCGGTGCGGGGTGGTTG
GTGTGGAAGACAACGAACGG

Downstream 100 bases:

>100_bases
ATGGGGAGTAGAGAATAGGGAATGGGGGAAACGCGCGCCGCGGCAATCTGGGGGCGCGGGCAACGAGGTGAGTGCTTACT
GATACTGTTCGCGCAAATTC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSKTQMNSARKTAVMLAIAIGLTACSSATVVRSPGASGSGASSRPSAAPRPSVPRPGATVTVQRGDTLYAISRRTNITAA
DLAAWNGLSSPNTIYPGQTLKLYPPGASKPGGSAPVAGGTVAPPRPAVPIAAPVSSGFSWRWPADGVVVGTFVTGETTKQ
GVDIAGTSGQAVRAAADGVVVYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRLLNEGQSVKAGQQIAEMGRSGASRDMLH
FEIRYNGKPVDPLLYLPKK

Sequences:

>Translated_259_residues
MSKTQMNSARKTAVMLAIAIGLTACSSATVVRSPGASGSGASSRPSAAPRPSVPRPGATVTVQRGDTLYAISRRTNITAA
DLAAWNGLSSPNTIYPGQTLKLYPPGASKPGGSAPVAGGTVAPPRPAVPIAAPVSSGFSWRWPADGVVVGTFVTGETTKQ
GVDIAGTSGQAVRAAADGVVVYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRLLNEGQSVKAGQQIAEMGRSGASRDMLH
FEIRYNGKPVDPLLYLPKK
>Mature_258_residues
SKTQMNSARKTAVMLAIAIGLTACSSATVVRSPGASGSGASSRPSAAPRPSVPRPGATVTVQRGDTLYAISRRTNITAAD
LAAWNGLSSPNTIYPGQTLKLYPPGASKPGGSAPVAGGTVAPPRPAVPIAAPVSSGFSWRWPADGVVVGTFVTGETTKQG
VDIAGTSGQAVRAAADGVVVYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRLLNEGQSVKAGQQIAEMGRSGASRDMLHF
EIRYNGKPVDPLLYLPKK

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=206, Percent_Identity=44.1747572815534, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=60, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI87082297, Length=127, Percent_Identity=37.007874015748, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26692; Mature: 26560

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTQMNSARKTAVMLAIAIGLTACSSATVVRSPGASGSGASSRPSAAPRPSVPRPGATV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE
TVQRGDTLYAISRRTNITAADLAAWNGLSSPNTIYPGQTLKLYPPGASKPGGSAPVAGGT
EEECCCEEEEEECCCCCCHHHHHHHCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCC
VAPPRPAVPIAAPVSSGFSWRWPADGVVVGTFVTGETTKQGVDIAGTSGQAVRAAADGVV
CCCCCCCCEEECCCCCCCEEECCCCCEEEEEEEECCCCCCCEEEECCCCCEEEEECCCEE
VYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRLLNEGQSVKAGQQIAEMGRSGASRDMLH
EEECCCEEEECEEEEEEECCCEEECCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEE
FEIRYNGKPVDPLLYLPKK
EEEEECCCCCCCEEECCCC
>Mature Secondary Structure 
SKTQMNSARKTAVMLAIAIGLTACSSATVVRSPGASGSGASSRPSAAPRPSVPRPGATV
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE
TVQRGDTLYAISRRTNITAADLAAWNGLSSPNTIYPGQTLKLYPPGASKPGGSAPVAGGT
EEECCCEEEEEECCCCCCHHHHHHHCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCC
VAPPRPAVPIAAPVSSGFSWRWPADGVVVGTFVTGETTKQGVDIAGTSGQAVRAAADGVV
CCCCCCCCEEECCCCCCCEEECCCCCEEEEEEEECCCCCCCEEEECCCCCEEEEECCCEE
VYSGAGLVGYGELIIIKHNDQWLSAYGHNRKRLLNEGQSVKAGQQIAEMGRSGASRDMLH
EEECCCEEEECEEEEEEECCCEEECCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEE
FEIRYNGKPVDPLLYLPKK
EEEEECCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]