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The map label for this gene is araJ [H]

Identifier: 21242116

GI number: 21242116

Start: 1570818

End: 1571999

Strand: Direct

Name: araJ [H]

Synonym: XAC1363

Alternate gene names: 21242116

Gene position: 1570818-1571999 (Clockwise)

Preceding gene: 21242113

Following gene: 21242117

Centisome position: 30.35

GC content: 65.31

Gene sequence:

>1182_bases
GTGTCCCGGCGCGATTACGTGCTGATCCTGCTTGCGCTGGCGATGGGCGGCTTTGCGATCGGCATCAGCGAATTTTCCAC
CATGGGCCTGATGACGCAGATTGCGCAGGGCTTGCAGATTACCGAGCCGCAGGTCGGTCACGTCATCAGCGCGTATGCAT
TGGGTGTGGTGGTGGGTGCGCCCTTGCTGGCGATCCTGGGCGCGCGCTGGCCGCGGCGCACCTTGTTGCTGCTGTTGATG
GTGTTCTATGCGCTGGGCAACGTGGCCAGCGCATTGGCGCCGGGCTACCACGCCATGCTGCTGTGTCGCTTCATCGCCGG
GCTGCCGCATGGCGCCTACTTCGGCGTTGCGTCGCTGGTGGCCGCATCGATCAGCCCACCCAATCAACGTGCCACTGCAG
TGGGGCGCGTGTTGTTGGGTTTGAGCGTTGCGCTGCTGGTGGGCAACCCGCTGGCGACCTGGCTGGGGCAAATCGTGAGC
TGGCGCTGGGCCTATGCATCGGTGTCGGTGATTGCGCTGGGCACGGTCGCCGCTGTGGCGGTCCTGTTGCCGCCGCAGCC
GGAGGAGCCGCGTCAGCAGCCGCTGCGCGAATTGCGCGCGTTCAATCAGCCGCAGGTGTGGCTGGCATTGGCGATCGGGG
CGGTGGGTTTTTCCGGCATGTTCTGCGTCTTCAGTTACCTTGCGCCGACGTTGACGGCAGTGACCGGCGTCATCGCAGCG
CGCATTCCGTTAGCGATGGTGGCATTCGGCGTGGGCGGGGTGCTGGGAAGCATCCTGGGCGGTTGGTTGTTCGATCGCAT
GCAGTTCCGCGCGGTGCCGGTGTTGCTGGTGTGGTCGGTGGTGGTGATGTTGACGTTTCCGCTGGCAGCGCAATCGGCCG
TGTGGGTGTTCGTCTCCATCGTGGCGGTCGGCACCATGGGGGCGCTGGCGCCAGCCTTGCAGACACGCTTGATGGACGTG
GCGGCAGAAGCGCAGACCCTGGCCGCAGCCTCCAACCACGCAGCGTTCAATACGGCCAATGCATTGGGTCCATGGCTGGG
TGGCATGGCGATCACGGCAGGCTGGGGTTGGACCTCTACCGGTTACGTCGGCGCGGCCACCGCGCTCGGCGGGTTGCTGG
TCTATGCAGCGGCGGTGTGGCAGGAACGTCATCAGCAACGTACGGTATTGAGGAGTTGCTGA

Upstream 100 bases:

>100_bases
GTGGTGTCGCGCTTTCATGCTCTGCTGCATTGCACAATAATAGACCGCCCCCGCATTCCTGGAGTCGGGCATGACCGATA
CCGATCTTTCTTCGCCACGC

Downstream 100 bases:

>100_bases
GTTGCCGGTGCCGCGATGCGTCGAGCGTCCGCGGCGCCGTTTCGATCGGGTGGCAGCACTTGCGCCGCTGTGCAGCGATC
CGCAGCAGACCACGTGGCAT

Product: MFS transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MSRRDYVLILLALAMGGFAIGISEFSTMGLMTQIAQGLQITEPQVGHVISAYALGVVVGAPLLAILGARWPRRTLLLLLM
VFYALGNVASALAPGYHAMLLCRFIAGLPHGAYFGVASLVAASISPPNQRATAVGRVLLGLSVALLVGNPLATWLGQIVS
WRWAYASVSVIALGTVAAVAVLLPPQPEEPRQQPLRELRAFNQPQVWLALAIGAVGFSGMFCVFSYLAPTLTAVTGVIAA
RIPLAMVAFGVGGVLGSILGGWLFDRMQFRAVPVLLVWSVVVMLTFPLAAQSAVWVFVSIVAVGTMGALAPALQTRLMDV
AAEAQTLAAASNHAAFNTANALGPWLGGMAITAGWGWTSTGYVGAATALGGLLVYAAAVWQERHQQRTVLRSC

Sequences:

>Translated_393_residues
MSRRDYVLILLALAMGGFAIGISEFSTMGLMTQIAQGLQITEPQVGHVISAYALGVVVGAPLLAILGARWPRRTLLLLLM
VFYALGNVASALAPGYHAMLLCRFIAGLPHGAYFGVASLVAASISPPNQRATAVGRVLLGLSVALLVGNPLATWLGQIVS
WRWAYASVSVIALGTVAAVAVLLPPQPEEPRQQPLRELRAFNQPQVWLALAIGAVGFSGMFCVFSYLAPTLTAVTGVIAA
RIPLAMVAFGVGGVLGSILGGWLFDRMQFRAVPVLLVWSVVVMLTFPLAAQSAVWVFVSIVAVGTMGALAPALQTRLMDV
AAEAQTLAAASNHAAFNTANALGPWLGGMAITAGWGWTSTGYVGAATALGGLLVYAAAVWQERHQQRTVLRSC
>Mature_392_residues
SRRDYVLILLALAMGGFAIGISEFSTMGLMTQIAQGLQITEPQVGHVISAYALGVVVGAPLLAILGARWPRRTLLLLLMV
FYALGNVASALAPGYHAMLLCRFIAGLPHGAYFGVASLVAASISPPNQRATAVGRVLLGLSVALLVGNPLATWLGQIVSW
RWAYASVSVIALGTVAAVAVLLPPQPEEPRQQPLRELRAFNQPQVWLALAIGAVGFSGMFCVFSYLAPTLTAVTGVIAAR
IPLAMVAFGVGGVLGSILGGWLFDRMQFRAVPVLLVWSVVVMLTFPLAAQSAVWVFVSIVAVGTMGALAPALQTRLMDVA
AEAQTLAAASNHAAFNTANALGPWLGGMAITAGWGWTSTGYVGAATALGGLLVYAAAVWQERHQQRTVLRSC

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=384, Percent_Identity=39.84375, Blast_Score=222, Evalue=3e-59,
Organism=Escherichia coli, GI1786595, Length=382, Percent_Identity=31.9371727748691, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI145693198, Length=245, Percent_Identity=23.6734693877551, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787808, Length=375, Percent_Identity=24.8, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41156; Mature: 41025

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRRDYVLILLALAMGGFAIGISEFSTMGLMTQIAQGLQITEPQVGHVISAYALGVVVGA
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
PLLAILGARWPRRTLLLLLMVFYALGNVASALAPGYHAMLLCRFIAGLPHGAYFGVASLV
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
AASISPPNQRATAVGRVLLGLSVALLVGNPLATWLGQIVSWRWAYASVSVIALGTVAAVA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLPPQPEEPRQQPLRELRAFNQPQVWLALAIGAVGFSGMFCVFSYLAPTLTAVTGVIAA
HHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIPLAMVAFGVGGVLGSILGGWLFDRMQFRAVPVLLVWSVVVMLTFPLAAQSAVWVFVSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVGTMGALAPALQTRLMDVAAEAQTLAAASNHAAFNTANALGPWLGGMAITAGWGWTST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHCCEEEEECCCCCCC
GYVGAATALGGLLVYAAAVWQERHQQRTVLRSC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]