| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is imuB [H]
Identifier: 21241952
GI number: 21241952
Start: 1363596
End: 1365014
Strand: Direct
Name: imuB [H]
Synonym: XAC1198
Alternate gene names: 21241952
Gene position: 1363596-1365014 (Clockwise)
Preceding gene: 21241951
Following gene: 21241953
Centisome position: 26.35
GC content: 70.05
Gene sequence:
>1419_bases ATGTTGTGGGCCTGCATAGTGCTGCCGCAGCTGGCGCTGGACGCCGTCCTTCGGCGTCTGGAAGCGCCGCAGGCGCCGCT GGTGCTGGTGGAAGGCCCGGCGCAGCTGCGCAGCCTGCATTCGGTCAATGCCGCCGCTGGCGCGGCTGGGTTGAAGGCCG GCATGCGGCTATCGGCGGCGCATGCCTTGATGACCCAGGTACGCACCATCGACTACGACGCGCAAAACGAAGCGCGCACG CAGCGCTTTCTTGCGGCCTGGGCGTATCGGCATAGTTCGCTGGTCAGCCAGCAGTGGTCGCGCGCCATCGTGCTGGAAGC CGGTGCCAGCTTTCGCCTGTTCGGCCCCTGGCCGCGCTTCGAGCGTCGCCTGCGCGATGAGCTGCAAGCCTTGGGCTTCC AGCACCGGCTGGCGCTGGCACCCACGCCGCGCGCCGCGCGCGTGCTGGCCGGCCTGCGCGACGGCATGGTGGTGACGCAA TTGCCGGCCCTGCACAGCACGCTCGACAAGGTGCCTGTGCGCCGCGCTGCATTGCCCGACGATGCCGGCGAGCGCCTGCA GCATATGGGCGTGCGCACGCTCGCGGCGGTGCGTGGGCTGCCGCGCGACGGGTTGCGCCGGCGTTTCGGTGCGGGCCTGC TCGATCATCTGGATCGCCTCTACGGGCAGGTCGACGACCCACTGGAGTGCTACGCGCCGCCAGACCACTTCGACCACCGC GTGGAGTTGGGGTATGAGGTGGAAACGCATCCGGCGCTGCTGTTTCCGTTGCGCCGGCTGATCGGCGACCTATGCACGTA TCTGTCCATTCGCGATGGCGGCGTGCAGCGGTTTTTATTACGCCTGGAGCACGAAGAAGGCGCGACCGATGTGGAGATCG GCCTGCTCACGCCGGAACGCGCGCCCACCTTGCTGTTCGAGCTGGCCCGTAACCGGCTGGAGCGGGTGGAGATTCCGCGG CCGGTGGTGGCGATGCGCTTGCTGGCACGGCAGCTGCCACCGTTCGTACCGGCCATGCGCGACTTGTTCGATCAGCGCGC GCAGCAATCGGTGGAGTGGCCGCAACTGCGCGAGCGCCTGCGTGCACGGCTGGGCGATGACGCGGTCTATCGCGTGTTGC CGGCCGACGACCCGCGCCCGGAGCGCGCGTGGCGCCGCGCCATCGGCGATGCGGTGCGCGAAGTCGCTGCGCCGCCGCGT CCGCCGCGCCCCACCTGGCTGCTGCCGCAGCCGGTGCCGCTCCACGACCCGCACCTGCGCATCGTGTCCGGCCCGGAGCG GCTGGAAAGCGGTTGGTGGGACGACGATGAAGCGCGTCGCGATTACTACGTGGTGGAGACCGCACGCGGCCGGCGTGGCT GGGCATTCGCCGCGCCCGGTCGGGTGGACGGCTGGATGCTGCATGGGTGGTTTGCGTGA
Upstream 100 bases:
>100_bases GCTGGAATTCCTGCCCGAGCGCGATGCCTGGCAGGTGCGCAAGTGCCGCGGCGGGCAGGTACCGTCGCAGCCGCTGCGGC TGGCGCATTGAGGCGCGCGC
Downstream 100 bases:
>100_bases GCGCAGGGATGCCATTGCAGGATCCGGGCACGGGCCGCCTGGCTGCTGGTCGCGGGTTGGGTGCAGGCTACAGGTGCCGG GCCTCCAAAAAGAACGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MLWACIVLPQLALDAVLRRLEAPQAPLVLVEGPAQLRSLHSVNAAAGAAGLKAGMRLSAAHALMTQVRTIDYDAQNEART QRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRFERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQ LPALHSTLDKVPVRRAALPDDAGERLQHMGVRTLAAVRGLPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR VELGYEVETHPALLFPLRRLIGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPERAPTLLFELARNRLERVEIPR PVVAMRLLARQLPPFVPAMRDLFDQRAQQSVEWPQLRERLRARLGDDAVYRVLPADDPRPERAWRRAIGDAVREVAAPPR PPRPTWLLPQPVPLHDPHLRIVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRVDGWMLHGWFA
Sequences:
>Translated_472_residues MLWACIVLPQLALDAVLRRLEAPQAPLVLVEGPAQLRSLHSVNAAAGAAGLKAGMRLSAAHALMTQVRTIDYDAQNEART QRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRFERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQ LPALHSTLDKVPVRRAALPDDAGERLQHMGVRTLAAVRGLPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR VELGYEVETHPALLFPLRRLIGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPERAPTLLFELARNRLERVEIPR PVVAMRLLARQLPPFVPAMRDLFDQRAQQSVEWPQLRERLRARLGDDAVYRVLPADDPRPERAWRRAIGDAVREVAAPPR PPRPTWLLPQPVPLHDPHLRIVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRVDGWMLHGWFA >Mature_472_residues MLWACIVLPQLALDAVLRRLEAPQAPLVLVEGPAQLRSLHSVNAAAGAAGLKAGMRLSAAHALMTQVRTIDYDAQNEART QRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRFERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQ LPALHSTLDKVPVRRAALPDDAGERLQHMGVRTLAAVRGLPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR VELGYEVETHPALLFPLRRLIGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPERAPTLLFELARNRLERVEIPR PVVAMRLLARQLPPFVPAMRDLFDQRAQQSVEWPQLRERLRARLGDDAVYRVLPADDPRPERAWRRAIGDAVREVAAPPR PPRPTWLLPQPVPLHDPHLRIVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRVDGWMLHGWFA
Specific function: Along with dnaE2 and imuA is required for the error- prone processing of DNA lesions [H]
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001126 [H]
Pfam domain/function: PF00817 IMS [H]
EC number: NA
Molecular weight: Translated: 53384; Mature: 53384
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLWACIVLPQLALDAVLRRLEAPQAPLVLVEGPAQLRSLHSVNAAAGAAGLKAGMRLSAA CEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHH HALMTQVRTIDYDAQNEARTQRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRF HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCHHH ERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQLPALHSTLDKVPVRRAALPD HHHHHHHHHHCCHHHEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCC DAGERLQHMGVRTLAAVRGLPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCC VELGYEVETHPALLFPLRRLIGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPER EEECEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCC APTLLFELARNRLERVEIPRPVVAMRLLARQLPPFVPAMRDLFDQRAQQSVEWPQLRERL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH RARLGDDAVYRVLPADDPRPERAWRRAIGDAVREVAAPPRPPRPTWLLPQPVPLHDPHLR HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE IVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRVDGWMLHGWFA EECCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEECC >Mature Secondary Structure MLWACIVLPQLALDAVLRRLEAPQAPLVLVEGPAQLRSLHSVNAAAGAAGLKAGMRLSAA CEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHH HALMTQVRTIDYDAQNEARTQRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRF HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCHHH ERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQLPALHSTLDKVPVRRAALPD HHHHHHHHHHCCHHHEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCC DAGERLQHMGVRTLAAVRGLPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCC VELGYEVETHPALLFPLRRLIGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPER EEECEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCC APTLLFELARNRLERVEIPRPVVAMRLLARQLPPFVPAMRDLFDQRAQQSVEWPQLRERL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH RARLGDDAVYRVLPADDPRPERAWRRAIGDAVREVAAPPRPPRPTWLLPQPVPLHDPHLR HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE IVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRVDGWMLHGWFA EECCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA