| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is uidR
Identifier: 21241927
GI number: 21241927
Start: 1334967
End: 1335596
Strand: Reverse
Name: uidR
Synonym: XAC1173
Alternate gene names: NA
Gene position: 1335596-1334967 (Counterclockwise)
Preceding gene: 21241931
Following gene: 77748563
Centisome position: 25.81
GC content: 63.97
Gene sequence:
>630_bases ATGTCCAACGTCCTTCAGCTGCGCACCGCAAAACAGCGCGAAGAGCTCCTGGTAGACGACGTACTGGACGCCGCCGAACG CTGCATCGACGAGATCGGCCTTTCGGCCACCAGCTTCGAGCTCATCGCCGAACGCACCCGTCTGTCATGCGGCAGTCTGC TGCAGCGCTTCGAAGACAAGGACGCGCTGGTGCGCGCATTGCTCGAACGCAACTACATGCGCGCCATCCGTCAGATGTGG CTGGTGGAACGCCCGGCCAACGTGCACGTGGTGGACTTCATCGCCGGCCTGCTCGAAGACTGGCTGCTGCAGGAAATCAA CATCAAGCGCACCCGCATCGACCTGGAGCTGCACCTGGCTACCCTGCGCGACCCGGTGCTGGCCGCCTTCATGCGCCGGC AGAGCGCATCGCTGATCGAACACCTCAGCGCATTGCTCAAGCGCCTGCTCCGCGGCCACACCGACACCGCCAGCAGCGAA CACGAATTCCAGGCCCGCGTCTTCGCCGTCGCTGCCATGTGCGGCGGCCTGCACAGCGTGATGACCAGCGGCATGGAACT CAACCGCATGCATCTGCAGCTGATCCTGCGGGAGAGTTTGTCGGGCATCCTCAAGTCGGCGCCGCTGTAA
Upstream 100 bases:
>100_bases ACGCTGCAAGGAACATGCGCCATAGCACGGACCAGCGCGGCTCCAACGGATGCATAACCCTGTCTCGGTATACTGCAGGC CCCCGACACACCGCTCGCCC
Downstream 100 bases:
>100_bases TCCTCAAGCAGCACCGGCTCGCGATTGCGGGCCGCATGCTCCCGCCATTTGCCAGCGCTCACTCAGTCTGCCGACGACGT CGACGCTTCATCCGCTGCAC
Product: uid family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MSNVLQLRTAKQREELLVDDVLDAAERCIDEIGLSATSFELIAERTRLSCGSLLQRFEDKDALVRALLERNYMRAIRQMW LVERPANVHVVDFIAGLLEDWLLQEINIKRTRIDLELHLATLRDPVLAAFMRRQSASLIEHLSALLKRLLRGHTDTASSE HEFQARVFAVAAMCGGLHSVMTSGMELNRMHLQLILRESLSGILKSAPL
Sequences:
>Translated_209_residues MSNVLQLRTAKQREELLVDDVLDAAERCIDEIGLSATSFELIAERTRLSCGSLLQRFEDKDALVRALLERNYMRAIRQMW LVERPANVHVVDFIAGLLEDWLLQEINIKRTRIDLELHLATLRDPVLAAFMRRQSASLIEHLSALLKRLLRGHTDTASSE HEFQARVFAVAAMCGGLHSVMTSGMELNRMHLQLILRESLSGILKSAPL >Mature_208_residues SNVLQLRTAKQREELLVDDVLDAAERCIDEIGLSATSFELIAERTRLSCGSLLQRFEDKDALVRALLERNYMRAIRQMWL VERPANVHVVDFIAGLLEDWLLQEINIKRTRIDLELHLATLRDPVLAAFMRRQSASLIEHLSALLKRLLRGHTDTASSEH EFQARVFAVAAMCGGLHSVMTSGMELNRMHLQLILRESLSGILKSAPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23710; Mature: 23579
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNVLQLRTAKQREELLVDDVLDAAERCIDEIGLSATSFELIAERTRLSCGSLLQRFEDK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH DALVRALLERNYMRAIRQMWLVERPANVHVVDFIAGLLEDWLLQEINIKRTRIDLELHLA HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH TLRDPVLAAFMRRQSASLIEHLSALLKRLLRGHTDTASSEHEFQARVFAVAAMCGGLHSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MTSGMELNRMHLQLILRESLSGILKSAPL HHCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SNVLQLRTAKQREELLVDDVLDAAERCIDEIGLSATSFELIAERTRLSCGSLLQRFEDK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH DALVRALLERNYMRAIRQMWLVERPANVHVVDFIAGLLEDWLLQEINIKRTRIDLELHLA HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH TLRDPVLAAFMRRQSASLIEHLSALLKRLLRGHTDTASSEHEFQARVFAVAAMCGGLHSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MTSGMELNRMHLQLILRESLSGILKSAPL HHCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA