| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is cirA [C]
Identifier: 21241764
GI number: 21241764
Start: 1150751
End: 1152874
Strand: Reverse
Name: cirA [C]
Synonym: XAC0999
Alternate gene names: 21241764
Gene position: 1152874-1150751 (Counterclockwise)
Preceding gene: 21241767
Following gene: 21241715
Centisome position: 22.28
GC content: 63.7
Gene sequence:
>2124_bases ATGACTCCTCGCCTTCTGTCTGCCGCCATCACCGTCGCCTTGCTGGCCGCCCCCATCGGTGCGGCGTCTGCCGCCGATGC CGACTCCGAGCGCACGACCGACCTGGATACGGTCAATGTGATCGCCAAGCTCGAGGCGGCACGCAATGCCCTGTCGCCGG ACATCGGCAGCAGCCAATTTGCCATCACCGCTGACGATATCGATCGCCTGCCGCTCGGCGCGGCGACGCCACTCAATCAG GTCCTGCTGCAGGCGCCGGGCGTGGTACAGGATTCCTACGGCGGCATCCACGTGCGCGGCGACCACGCCAACCTGCAGTA CCGCATCAACGGCGTGATCATTCCCGAATCCATCTCTGGCTTCGGCCAGAGCCTGGAGCCGCGCATCATCAAGAACCTCA AGCTGCTCGATGGCGCATTGCCGGCACAGTTCGGCGACCGCACCGCTGCGGTGGTCGACATCACCACCAAGAATGGGGCC GAGCTCGGCAATGGCGGCAGCGTCGGCATCACCGCGGGCTCCTACGGCACCATCAACCCCAACGCCTCGCTGTGGGGCAG CAGCGGGCGTTTGAGCTGGTTCGTCAGCGGCGATTACGACCAGAACAAGAATGGCCTGGAAAACCCGGTCGACAGCCTCA ACCCCCTCCATGACAAAACCCATCAGGGCAAGGGCTTCGCCGATCTGACCTACCTGGTCAACGAGGACACCCGTCTCAGC CTGCTGGTCGGCTACGCGAACAACCGCTTCCAGATCCCCAACAATCCGGGGCAGACGCCGGCCTTCGATTACCTGGGCAC CACCGATTTCGACTCCTCGCGCCTGGACGAGAACCAGCGCGAAAACACCCGTTTCGGCACCCTGGCCCTGCAAGGCACGC TCGGCGACACCAACTATCAGCTCTCCGCCGGCCAGCGTTACAGCAGCGTCGCCTTCTCCCCCGACGTTGCCGGCGACCTG ATCTTCAACGGCATCGCCTCGCAAGTGGACCGCAGCAACCGCGCCAATACCGTGCAGGCGGACTTCGCAACGCCCTGGGG CGGATCGCACACGCTGCGCTACGGCGTGTACGGCAATTTCGAACACGCCATCGCCAGCAACAATTCGTATGTCTTCCCTG CCAACGACGACGGCAGCCAGAGCAGCAACGTGCCGCTGTTCATTCTCGACGGCAGCCGCTTCCATGCCAGCACCTACGCG CTCTACCTGCAGGACGAGTGGAAGATCGGCGAGGACTGGACCGTCAATTACGGCCTGCGCGGCGACAAGTACAAGGCCTT CGGCACGACCGAAGGTCAGCTCAGTCCGCGCCTGGGCGTCATCTGGCGCGCCAGCGACAGCACCACCCTGCACGCCGGAT ACGCGCGTTACTTCACCCCACCGGCCAGCGAGCTGATCTCCACCAGCGACATCGCGCTCTACGACGGCACCACCAATCAG CAGTCGGCCGGTGACGGCCCGACCACGCCACTGAGCGAGCGTAGCGACTACTACGACCTGGGTATCTCGCAGGTGGTCAC CGATCATCTGACGCTTGGCCTGGACACCTATTACCGCGAGGCCGACCGGCTCCAGGACGAAGGCCAGTTCGGTGCCGCCT ATGTCTATTCCACCTTCAATTACCGCTATGGCCGCATCCGCGGCGCCGAATTCAGCGCCGACTACACCAACGGGCCCGTG ACGGCATATTTCAACCTCGCCTACAGCAAGGCCATGGGCAAGCGGGTCATGACCAGCCTGTACAACTTCGATCCGGATGC GCTGGCCTATACCTACGACAACTGGATCCATCTGGATCACGACCAGAAGCTGACCTCGTCCGGCGGCGTCAACTACGCCT TCAGCGAAGGCAGCAAGGTCGGCCTCAACTATCTGTTCGGCAGCGGCTTGCGCACCGATACCGACACGGTACCCAACGGC GCTTCGCTTCCGTCGTACTTCCAGTTGAATGCCAGCGTCGGTCACGACTTCGACGTCAGCACGCATCCGCTGCATGTGCA ACTGGCCGCGGTCAATGTCCTCAACCGCAGCTACCAGTTGCGCGATGGTGGCGGCATCGGCGTGTTCGCGCCGCAATGGG CGCCGCGCCGCGGCGTCTATGTGAGCCTGCAGCAGGACTTCTGA
Upstream 100 bases:
>100_bases CGCCCGTCGAGCCATGACTTTCGACCTACGCTAGCGCTCGCCAAAGCGCCCAACGTTACAAAATAACAACATCCTCCCTC ACCCACCGCGCGAAACCGCC
Downstream 100 bases:
>100_bases TTGCGGTGCGAGGCAGCGAATGACCGGAACAGGACCAGCCCATTCGTTGCCGAAAGGCTGCAGCACGGCTGGCCACGCTG CGTACCGCCTGCATGGCGGG
Product: colicin I receptor
Products: NA
Alternate protein names: Nb-Dependent Outer Membrane Receptor Protein; NB Dependent Receptor; Hemin Receptor; NB-Dependent Outer Membrane Receptor; Outer Membrane Insertion C-Terminal Signal; Outer Membrane Receptor For Iron Transport; Outer Membrane Colicin I Receptor; Nb-Dependent Receptor; NB Potential Colicin Receptor; Cna Protein B-Type Domain Protein; Colicin I Receptor; NB-Dependent Siderophore Receptor; Ferrichrome-Iron Receptor
Number of amino acids: Translated: 707; Mature: 706
Protein sequence:
>707_residues MTPRLLSAAITVALLAAPIGAASAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQFAITADDIDRLPLGAATPLNQ VLLQAPGVVQDSYGGIHVRGDHANLQYRINGVIIPESISGFGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKNGA ELGNGGSVGITAGSYGTINPNASLWGSSGRLSWFVSGDYDQNKNGLENPVDSLNPLHDKTHQGKGFADLTYLVNEDTRLS LLVGYANNRFQIPNNPGQTPAFDYLGTTDFDSSRLDENQRENTRFGTLALQGTLGDTNYQLSAGQRYSSVAFSPDVAGDL IFNGIASQVDRSNRANTVQADFATPWGGSHTLRYGVYGNFEHAIASNNSYVFPANDDGSQSSNVPLFILDGSRFHASTYA LYLQDEWKIGEDWTVNYGLRGDKYKAFGTTEGQLSPRLGVIWRASDSTTLHAGYARYFTPPASELISTSDIALYDGTTNQ QSAGDGPTTPLSERSDYYDLGISQVVTDHLTLGLDTYYREADRLQDEGQFGAAYVYSTFNYRYGRIRGAEFSADYTNGPV TAYFNLAYSKAMGKRVMTSLYNFDPDALAYTYDNWIHLDHDQKLTSSGGVNYAFSEGSKVGLNYLFGSGLRTDTDTVPNG ASLPSYFQLNASVGHDFDVSTHPLHVQLAAVNVLNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF
Sequences:
>Translated_707_residues MTPRLLSAAITVALLAAPIGAASAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQFAITADDIDRLPLGAATPLNQ VLLQAPGVVQDSYGGIHVRGDHANLQYRINGVIIPESISGFGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKNGA ELGNGGSVGITAGSYGTINPNASLWGSSGRLSWFVSGDYDQNKNGLENPVDSLNPLHDKTHQGKGFADLTYLVNEDTRLS LLVGYANNRFQIPNNPGQTPAFDYLGTTDFDSSRLDENQRENTRFGTLALQGTLGDTNYQLSAGQRYSSVAFSPDVAGDL IFNGIASQVDRSNRANTVQADFATPWGGSHTLRYGVYGNFEHAIASNNSYVFPANDDGSQSSNVPLFILDGSRFHASTYA LYLQDEWKIGEDWTVNYGLRGDKYKAFGTTEGQLSPRLGVIWRASDSTTLHAGYARYFTPPASELISTSDIALYDGTTNQ QSAGDGPTTPLSERSDYYDLGISQVVTDHLTLGLDTYYREADRLQDEGQFGAAYVYSTFNYRYGRIRGAEFSADYTNGPV TAYFNLAYSKAMGKRVMTSLYNFDPDALAYTYDNWIHLDHDQKLTSSGGVNYAFSEGSKVGLNYLFGSGLRTDTDTVPNG ASLPSYFQLNASVGHDFDVSTHPLHVQLAAVNVLNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF >Mature_706_residues TPRLLSAAITVALLAAPIGAASAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQFAITADDIDRLPLGAATPLNQV LLQAPGVVQDSYGGIHVRGDHANLQYRINGVIIPESISGFGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKNGAE LGNGGSVGITAGSYGTINPNASLWGSSGRLSWFVSGDYDQNKNGLENPVDSLNPLHDKTHQGKGFADLTYLVNEDTRLSL LVGYANNRFQIPNNPGQTPAFDYLGTTDFDSSRLDENQRENTRFGTLALQGTLGDTNYQLSAGQRYSSVAFSPDVAGDLI FNGIASQVDRSNRANTVQADFATPWGGSHTLRYGVYGNFEHAIASNNSYVFPANDDGSQSSNVPLFILDGSRFHASTYAL YLQDEWKIGEDWTVNYGLRGDKYKAFGTTEGQLSPRLGVIWRASDSTTLHAGYARYFTPPASELISTSDIALYDGTTNQQ SAGDGPTTPLSERSDYYDLGISQVVTDHLTLGLDTYYREADRLQDEGQFGAAYVYSTFNYRYGRIRGAEFSADYTNGPVT AYFNLAYSKAMGKRVMTSLYNFDPDALAYTYDNWIHLDHDQKLTSSGGVNYAFSEGSKVGLNYLFGSGLRTDTDTVPNGA SLPSYFQLNASVGHDFDVSTHPLHVQLAAVNVLNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF
Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76502; Mature: 76371
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPRLLSAAITVALLAAPIGAASAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQF CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE AITADDIDRLPLGAATPLNQVLLQAPGVVQDSYGGIHVRGDHANLQYRINGVIIPESISG EEECCCCCCCCCCCCCCHHHHHHHCCCCEEECCCCEEEEECCCCEEEEEEEEEECCCCCC FGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKNGAELGNGGSVGITAGSYGTINP CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEECC NASLWGSSGRLSWFVSGDYDQNKNGLENPVDSLNPLHDKTHQGKGFADLTYLVNEDTRLS CCCEECCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCEEE LLVGYANNRFQIPNNPGQTPAFDYLGTTDFDSSRLDENQRENTRFGTLALQGTLGDTNYQ EEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCCCEE LSAGQRYSSVAFSPDVAGDLIFNGIASQVDRSNRANTVQADFATPWGGSHTLRYGVYGNF EECCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCC EHAIASNNSYVFPANDDGSQSSNVPLFILDGSRFHASTYALYLQDEWKIGEDWTVNYGLR HHHEECCCCEEEECCCCCCCCCCCCEEEECCCEEEEEEEEEEEEECCCCCCCEEEEECCC GDKYKAFGTTEGQLSPRLGVIWRASDSTTLHAGYARYFTPPASELISTSDIALYDGTTNQ CCCEEEECCCCCCCCCCEEEEEECCCCCEEECCCCEECCCCHHHHCCCCCEEEECCCCCC QSAGDGPTTPLSERSDYYDLGISQVVTDHLTLGLDTYYREADRLQDEGQFGAAYVYSTFN CCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEECC YRYGRIRGAEFSADYTNGPVTAYFNLAYSKAMGKRVMTSLYNFDPDALAYTYDNWIHLDH EEEEEEECCEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECC DQKLTSSGGVNYAFSEGSKVGLNYLFGSGLRTDTDTVPNGASLPSYFQLNASVGHDFDVS CCEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC THPLHVQLAAVNVLNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF CCCEEEEEEEEEECCCCEEEECCCCEEEECCCCCCCCCEEEEEECCC >Mature Secondary Structure TPRLLSAAITVALLAAPIGAASAADADSERTTDLDTVNVIAKLEAARNALSPDIGSSQF CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE AITADDIDRLPLGAATPLNQVLLQAPGVVQDSYGGIHVRGDHANLQYRINGVIIPESISG EEECCCCCCCCCCCCCCHHHHHHHCCCCEEECCCCEEEEECCCCEEEEEEEEEECCCCCC FGQSLEPRIIKNLKLLDGALPAQFGDRTAAVVDITTKNGAELGNGGSVGITAGSYGTINP CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCEECC NASLWGSSGRLSWFVSGDYDQNKNGLENPVDSLNPLHDKTHQGKGFADLTYLVNEDTRLS CCCEECCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCEEE LLVGYANNRFQIPNNPGQTPAFDYLGTTDFDSSRLDENQRENTRFGTLALQGTLGDTNYQ EEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCCCEE LSAGQRYSSVAFSPDVAGDLIFNGIASQVDRSNRANTVQADFATPWGGSHTLRYGVYGNF EECCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCC EHAIASNNSYVFPANDDGSQSSNVPLFILDGSRFHASTYALYLQDEWKIGEDWTVNYGLR HHHEECCCCEEEECCCCCCCCCCCCEEEECCCEEEEEEEEEEEEECCCCCCCEEEEECCC GDKYKAFGTTEGQLSPRLGVIWRASDSTTLHAGYARYFTPPASELISTSDIALYDGTTNQ CCCEEEECCCCCCCCCCEEEEEECCCCCEEECCCCEECCCCHHHHCCCCCEEEECCCCCC QSAGDGPTTPLSERSDYYDLGISQVVTDHLTLGLDTYYREADRLQDEGQFGAAYVYSTFN CCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEECC YRYGRIRGAEFSADYTNGPVTAYFNLAYSKAMGKRVMTSLYNFDPDALAYTYDNWIHLDH EEEEEEECCEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECC DQKLTSSGGVNYAFSEGSKVGLNYLFGSGLRTDTDTVPNGASLPSYFQLNASVGHDFDVS CCEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC THPLHVQLAAVNVLNRSYQLRDGGGIGVFAPQWAPRRGVYVSLQQDF CCCEEEEEEEEEECCCCEEEECCCCEEEECCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA