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The map label for this gene is xynC [H]

Identifier: 21241704

GI number: 21241704

Start: 1097734

End: 1098063

Strand: Direct

Name: xynC [H]

Synonym: XAC0934

Alternate gene names: 21241704

Gene position: 1097734-1098063 (Clockwise)

Preceding gene: 21241703

Following gene: 21241707

Centisome position: 21.21

GC content: 66.06

Gene sequence:

>330_bases
GTGAGCAAGCGCGGCTATGCGATGTCGCAGTTCGCGCGCTTCGTGCGGCCAGGGTCGGTGCGGGTCGGCGCCACCGAGCA
CCCGTATAGCGATGTCTCGGTGACCGCCTACCGCACGCCGGACAACAAGCTGGTGGTGGTGGCGGTCAACACCGGCACCG
GCCACCAGCGGCTGGACCTGACGCTACCGTCCGGCACTGCCACGCAGTTCGCCAAATACAGCACCTCGAGCACGCTCAAT
GTCGGGTTCGGCGGCAACTACAGCGTGGTCAACGGCAAGACCTCGCTGTATGTCGACCCGCAGAGCGTGGCCACGCTGGT
CGGAAACTGA

Upstream 100 bases:

>100_bases
CGGATTACGAATCGGCCGACTGGAGCGGCAGCGATTTCGTCAACTACCTCGCTGGTGGTACATCCGGCGCAGCTACGGGC
TGATCAGCGAAAACGGCGCA

Downstream 100 bases:

>100_bases
GCGCCGAACGAAACGTCGCAAGTCGTCGACAGGTGGCGTGGACGGCGCGCAGGGATCGGAGTGGAGGCGTGTGCACGCCA
CCCTGAGCCCCGGCTGTGCC

Product: truncated xylanase

Products: NA

Alternate protein names: Endoxylanase xynC; Glucuronoxylan xylanohydrolase [H]

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSKRGYAMSQFARFVRPGSVRVGATEHPYSDVSVTAYRTPDNKLVVVAVNTGTGHQRLDLTLPSGTATQFAKYSTSSTLN
VGFGGNYSVVNGKTSLYVDPQSVATLVGN

Sequences:

>Translated_109_residues
MSKRGYAMSQFARFVRPGSVRVGATEHPYSDVSVTAYRTPDNKLVVVAVNTGTGHQRLDLTLPSGTATQFAKYSTSSTLN
VGFGGNYSVVNGKTSLYVDPQSVATLVGN
>Mature_108_residues
SKRGYAMSQFARFVRPGSVRVGATEHPYSDVSVTAYRTPDNKLVVVAVNTGTGHQRLDLTLPSGTATQFAKYSTSSTLNV
GFGGNYSVVNGKTSLYVDPQSVATLVGN

Specific function: Catalyzes the depolymerization of methylglucuronoxylan (MeGAXn). It cleaves the beta-1,4-xylosidic bond penultimate to that linking carbon one of the xylose residue substituted with alpha-1,2-linked 4-O-methyl-D-glucuronate (MeGA) [H]

COG id: COG5520

COG function: function code M; O-Glycosyl hydrolase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 30 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR001139
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02055 Glyco_hydro_30 [H]

EC number: =3.2.1.136 [H]

Molecular weight: Translated: 11578; Mature: 11447

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRGYAMSQFARFVRPGSVRVGATEHPYSDVSVTAYRTPDNKLVVVAVNTGTGHQRLDL
CCCCCCCHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEE
TLPSGTATQFAKYSTSSTLNVGFGGNYSVVNGKTSLYVDPQSVATLVGN
EECCCCCCEEEEECCCCEEEECCCCCEEEECCCEEEEECHHHHEEECCC
>Mature Secondary Structure 
SKRGYAMSQFARFVRPGSVRVGATEHPYSDVSVTAYRTPDNKLVVVAVNTGTGHQRLDL
CCCCCCHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEE
TLPSGTATQFAKYSTSSTLNVGFGGNYSVVNGKTSLYVDPQSVATLVGN
EECCCCCCEEEEECCCCEEEECCCCCEEEECCCEEEEECHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA