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The map label for this gene is xynC [H]

Identifier: 21241703

GI number: 21241703

Start: 1097141

End: 1097716

Strand: Direct

Name: xynC [H]

Synonym: XAC0933

Alternate gene names: 21241703

Gene position: 1097141-1097716 (Clockwise)

Preceding gene: 77748557

Following gene: 21241704

Centisome position: 21.2

GC content: 64.41

Gene sequence:

>576_bases
ATGAAGAAGCCTTTGTCGATGTTGCGCGCTCTCACCTGCGCGATGGCCGTGCTGGTGGCGGGCCAAGCCGCCGCGCAGAC
GGTGACGATCACGCCCACGCAGACCTACCAGACGGTGCGCGGGTTCGGCGGCATGAACGGCGCCGGCTGGATCAACGACC
TGACACCCGCGCAGGTGGATCTGGCTTACGGCAGCGGCACCGGGCAGATCGGGTTGTCGATCCTGCGCATGCGCATCGAC
CCCTCCAGCTCAGGCTGGGCGACCCAGGTGCCGACGGCAACGCGCGTGCATGCGCTGGGCGGGTTGGTGTTCGCAACCCC
CTGGACGCCACCGGCTTACATGAAGTCCAACAACAGCCTGGTCAATGGCGGCAAGCTGCTGACGAACTATTACGGCGCCT
ACACCCAGCACCTGCTGGATTTCGCCAATTACATGTCGGGCAAGGGCGCACCGCTGTACGCGATTTCCCTGCAAAACGAG
CCGGATTGGCACCCGGATTACGAATCGGCCGACTGGAGCGGCAGCGATTTCGTCAACTACCTCGCTGGTGGTACATCCGG
CGCAGCTACGGGCTGA

Upstream 100 bases:

>100_bases
ACAATGAGACGCCACAGAAATTGAACTGCCATCTCCGCAGTCGATAGTCGGCGGGCCGTCCGTACCGCGATGCCGTCGCC
ATCCCTTTCCGGAGAAACCC

Downstream 100 bases:

>100_bases
TCAGCGAAAACGGCGCAGTGAGCAAGCGCGGCTATGCGATGTCGCAGTTCGCGCGCTTCGTGCGGCCAGGGTCGGTGCGG
GTCGGCGCCACCGAGCACCC

Product: truncated xylanase

Products: NA

Alternate protein names: Endoxylanase xynC; Glucuronoxylan xylanohydrolase [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKKPLSMLRALTCAMAVLVAGQAAAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVDLAYGSGTGQIGLSILRMRID
PSSSGWATQVPTATRVHALGGLVFATPWTPPAYMKSNNSLVNGGKLLTNYYGAYTQHLLDFANYMSGKGAPLYAISLQNE
PDWHPDYESADWSGSDFVNYLAGGTSGAATG

Sequences:

>Translated_191_residues
MKKPLSMLRALTCAMAVLVAGQAAAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVDLAYGSGTGQIGLSILRMRID
PSSSGWATQVPTATRVHALGGLVFATPWTPPAYMKSNNSLVNGGKLLTNYYGAYTQHLLDFANYMSGKGAPLYAISLQNE
PDWHPDYESADWSGSDFVNYLAGGTSGAATG
>Mature_191_residues
MKKPLSMLRALTCAMAVLVAGQAAAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVDLAYGSGTGQIGLSILRMRID
PSSSGWATQVPTATRVHALGGLVFATPWTPPAYMKSNNSLVNGGKLLTNYYGAYTQHLLDFANYMSGKGAPLYAISLQNE
PDWHPDYESADWSGSDFVNYLAGGTSGAATG

Specific function: Catalyzes the depolymerization of methylglucuronoxylan (MeGAXn). It cleaves the beta-1,4-xylosidic bond penultimate to that linking carbon one of the xylose residue substituted with alpha-1,2-linked 4-O-methyl-D-glucuronate (MeGA) [H]

COG id: COG5520

COG function: function code M; O-Glycosyl hydrolase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 30 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR001139
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02055 Glyco_hydro_30 [H]

EC number: =3.2.1.136 [H]

Molecular weight: Translated: 20145; Mature: 20145

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPLSMLRALTCAMAVLVAGQAAAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVD
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
LAYGSGTGQIGLSILRMRIDPSSSGWATQVPTATRVHALGGLVFATPWTPPAYMKSNNSL
EEECCCCCHHCEEEEEEEECCCCCCCEEECCCHHHHHHHCCEEEECCCCCHHHCCCCCCE
VNGGKLLTNYYGAYTQHLLDFANYMSGKGAPLYAISLQNEPDWHPDYESADWSGSDFVNY
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
LAGGTSGAATG
HCCCCCCCCCC
>Mature Secondary Structure
MKKPLSMLRALTCAMAVLVAGQAAAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVD
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
LAYGSGTGQIGLSILRMRIDPSSSGWATQVPTATRVHALGGLVFATPWTPPAYMKSNNSL
EEECCCCCHHCEEEEEEEECCCCCCCEEECCCHHHHHHHCCEEEECCCCCHHHCCCCCCE
VNGGKLLTNYYGAYTQHLLDFANYMSGKGAPLYAISLQNEPDWHPDYESADWSGSDFVNY
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHH
LAGGTSGAATG
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA