| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is nudG [C]
Identifier: 21241559
GI number: 21241559
Start: 937190
End: 938137
Strand: Direct
Name: nudG [C]
Synonym: XAC0789
Alternate gene names: 21241559
Gene position: 937190-938137 (Clockwise)
Preceding gene: 21241558
Following gene: 21241564
Centisome position: 18.11
GC content: 68.14
Gene sequence:
>948_bases ATGCCTGATTCTCTTCGATCCATTCACGTCGTTGCCGGCGTGGTCACCGACCCCCGCGGGCGCATCCTGCTGACCCGCCG CACCGAAACCCGCGACATGCCTGGCCTGTGGGAATTTCCGGGCGGCAAGCGCGAGCCTGGCGAGACCTCCGAACAAGCGC TGGTGCGCGAGCTCAACGAAGAGCTCGGCATCGAGGCGCAGGTGGGCGATTGGGTGATGGATGTGCCACAGCTCTATCCG GACAAGCGGCTGCGCCTGGAGGTGCGTCATATCACGAGCTGGAAAGGCAGCCCGCGCGGCCGCGAAGGACAGGCCATGAC CTGGGTGGCGGCAGACAAGCTGGCGCGTTATTCGATGCCGCCGGCCGACGTGCCGGTGGTGGGTGCGCTACGGCAGCCCG ACCGTTACCTGATCACGCCCGACCCGGAGGACGACGCGCGCTGGCTGGAGAGCCTGGAGCTTGCATTGCAGAACGGGATC ACGCGGATCCAGCTGCGTGCGCGGCAGCTGGCGCCTGCGCGTTGGCAGGCGCTGTTGCAGCAGGTGATGCGCCTGCGTGG CCGCGCGCGTGCGCAACTGTTGCTCAATCGCGATATCGCACTGGCTGCGGACCTTGGTATCGGCGTGCATCTGGGATCGG AGCAGCTGGCCGGTTTGCAGGAACGCCCGCTGCCCGCAGAGCAACTCGTGGCCGCGTCGTGCCATGGCCTGGACGACTTG CGCCACGCCCAACGGATCGGCTGCGACTTCGCGGTGCTGGGCCCGGTGCAGGCGACCGCTTCGCATCCGGGCGCCACACC CATCGGCTGGGACGGTTTCGAGACCTTGCGCGAACAGGTCTCGCTGCCGATCTACGCGCTCGGCGGCATGCAGGTCGAAG ATGTGCGTCAGGCGCGCTCGCATGGCGCGCAGGGCATCGCGGCGATCCGCGCGCTCTGGCCGCAATGA
Upstream 100 bases:
>100_bases GGCATTGGCGATACCGGTGCAACCCCTGCGTCAGCAAATCCCGAATCCCGCATCCCGGCCTGATTGCGCTGCACCGCTCA CTCGCGGCACTCTTGCAGCC
Downstream 100 bases:
>100_bases GCGCACCGCAGCGTCTGACGGCCGAACCGCCCGCACAATGCCCGCGATACCTGCCGCGGCGTACAGCGATCCAGCGGTGA TCCCACGCAGCCCCGATGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MPDSLRSIHVVAGVVTDPRGRILLTRRTETRDMPGLWEFPGGKREPGETSEQALVRELNEELGIEAQVGDWVMDVPQLYP DKRLRLEVRHITSWKGSPRGREGQAMTWVAADKLARYSMPPADVPVVGALRQPDRYLITPDPEDDARWLESLELALQNGI TRIQLRARQLAPARWQALLQQVMRLRGRARAQLLLNRDIALAADLGIGVHLGSEQLAGLQERPLPAEQLVAASCHGLDDL RHAQRIGCDFAVLGPVQATASHPGATPIGWDGFETLREQVSLPIYALGGMQVEDVRQARSHGAQGIAAIRALWPQ
Sequences:
>Translated_315_residues MPDSLRSIHVVAGVVTDPRGRILLTRRTETRDMPGLWEFPGGKREPGETSEQALVRELNEELGIEAQVGDWVMDVPQLYP DKRLRLEVRHITSWKGSPRGREGQAMTWVAADKLARYSMPPADVPVVGALRQPDRYLITPDPEDDARWLESLELALQNGI TRIQLRARQLAPARWQALLQQVMRLRGRARAQLLLNRDIALAADLGIGVHLGSEQLAGLQERPLPAEQLVAASCHGLDDL RHAQRIGCDFAVLGPVQATASHPGATPIGWDGFETLREQVSLPIYALGGMQVEDVRQARSHGAQGIAAIRALWPQ >Mature_314_residues PDSLRSIHVVAGVVTDPRGRILLTRRTETRDMPGLWEFPGGKREPGETSEQALVRELNEELGIEAQVGDWVMDVPQLYPD KRLRLEVRHITSWKGSPRGREGQAMTWVAADKLARYSMPPADVPVVGALRQPDRYLITPDPEDDARWLESLELALQNGIT RIQLRARQLAPARWQALLQQVMRLRGRARAQLLLNRDIALAADLGIGVHLGSEQLAGLQERPLPAEQLVAASCHGLDDLR HAQRIGCDFAVLGPVQATASHPGATPIGWDGFETLREQVSLPIYALGGMQVEDVRQARSHGAQGIAAIRALWPQ
Specific function: Specific For Pyrimidine Substrates. Acts On 5-Methyl- Dctp, Ctp And Dctp In Decreasing Order. [C]
COG id: COG0352
COG function: function code H; Thiamine monophosphate synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TMP-PPase family [H]
Homologues:
Organism=Escherichia coli, GI1788056, Length=126, Percent_Identity=40.4761904761905, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786288, Length=128, Percent_Identity=35.9375, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR022998 - InterPro: IPR003733 [H]
Pfam domain/function: PF02581 TMP-TENI [H]
EC number: 3.6.1.-; 2.5.1.3
Molecular weight: Translated: 34843; Mature: 34712
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDSLRSIHVVAGVVTDPRGRILLTRRTETRDMPGLWEFPGGKREPGETSEQALVRELNE CCCCHHEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ELGIEAQVGDWVMDVPQLYPDKRLRLEVRHITSWKGSPRGREGQAMTWVAADKLARYSMP HHCCEEECCHHHHHHHHHCCCCEEEEEEEEHHCCCCCCCCCCCCEEEEHHHHHHHHCCCC PADVPVVGALRQPDRYLITPDPEDDARWLESLELALQNGITRIQLRARQLAPARWQALLQ CCCCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCHHHHHHHHH QVMRLRGRARAQLLLNRDIALAADLGIGVHLGSEQLAGLQERPLPAEQLVAASCHGLDDL HHHHHHHHHHHHHHHCCCEEEEECCCCEEEECHHHHCCCCCCCCCHHHHHHHHHCCHHHH RHAQRIGCDFAVLGPVQATASHPGATPIGWDGFETLREQVSLPIYALGGMQVEDVRQARS HHHHHHCCCEEEECCCHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHH HGAQGIAAIRALWPQ CCCHHHHHHHHHCCC >Mature Secondary Structure PDSLRSIHVVAGVVTDPRGRILLTRRTETRDMPGLWEFPGGKREPGETSEQALVRELNE CCCHHEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ELGIEAQVGDWVMDVPQLYPDKRLRLEVRHITSWKGSPRGREGQAMTWVAADKLARYSMP HHCCEEECCHHHHHHHHHCCCCEEEEEEEEHHCCCCCCCCCCCCEEEEHHHHHHHHCCCC PADVPVVGALRQPDRYLITPDPEDDARWLESLELALQNGITRIQLRARQLAPARWQALLQ CCCCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCHHHHHHHHH QVMRLRGRARAQLLLNRDIALAADLGIGVHLGSEQLAGLQERPLPAEQLVAASCHGLDDL HHHHHHHHHHHHHHHCCCEEEEECCCCEEEECHHHHCCCCCCCCCHHHHHHHHHCCHHHH RHAQRIGCDFAVLGPVQATASHPGATPIGWDGFETLREQVSLPIYALGGMQVEDVRQARS HHHHHHCCCEEEECCCHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHH HGAQGIAAIRALWPQ CCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Fe; Mn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]