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The map label for this gene is yvoA [H]

Identifier: 21241482

GI number: 21241482

Start: 844988

End: 845755

Strand: Direct

Name: yvoA [H]

Synonym: XAC0711

Alternate gene names: 21241482

Gene position: 844988-845755 (Clockwise)

Preceding gene: 21241481

Following gene: 21241483

Centisome position: 16.33

GC content: 67.97

Gene sequence:

>768_bases
GTGGTCAAACCGAAAACCAACGCCAGGACGGACGACGATCCCAGGATGGACGCGCTGGCACTGGACGCGTCCGCGCCGAC
CCCGCTGTATCTGCAACTGGCCGCCAAGCTTACCGACGCCATCCGTGGCGGGCAGTGGAAGGCCGGCGAGGCGCTGCCGG
CCGAGCGCCAGCTGTGCGAGCGGCTGCAGATCTCGCGGGTGACCCTGCGCCAGGCGGTGGATGTGCTGGTCGAACAAGGC
CTGGTCTCGCGCCGGCAGGGCGCCGGCACCTTCGTCACCACGCAGATCCAGCATCAGCTCAGCGGCCTGACCAGTTTCAG
CGAGACGCTGCGCATCAAGGGCTATGAGCCGGGCACGCGCTGGCTGGAGCGGCGGCTGCGCCCGGCGCATGGCGAAGAGA
TCCTGCGCCTGGGCCTGTCGCCGGATGCCGCGGTGGCCTCGCTGACGCGGCTGCGCAGTGCCGACGACCGGGTCATGGCC
TACGAGCACGCGGTGTTGCCGCAACGCATCGTCGCCGACCCGCAGCAGATCGGCGATTCGCTCTACAGCTATCTGGATGC
GCAGGGCACGCCGGTGGTGCGTGCCCTGCAGTACTTCCGCGCCATCAATCTGCCCGCGCGGCTGGCCGAACACCTGCGCA
TGAAGACCGGCGAGGCGATTTTGCATGTGGTGCGCGTGGGCTATGCCCGCGATGGCAGCGCGATCGAATTGACCGACACC
TATTGCCACAACGACTTCTACGATTTCGTCGCCGAACTGCGCCGCTGA

Upstream 100 bases:

>100_bases
CGCGATTGCGTGCGTCGAGGTCGGCCGCGGCCTGATGCGCGTTGCGTAAATTGGTACTATATTGGACCTAACGAATCCCC
GTCGGTCCGGAGGACAGGCA

Downstream 100 bases:

>100_bases
CGCCAACGGCATTCCTTACGACAACCTCAGAGCCAGCCGATCCATGACTACCGCCAGGCCCGCAAACCCCGTTGTCTCGA
TCGCCATCGTCGGCGTGCTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MVKPKTNARTDDDPRMDALALDASAPTPLYLQLAAKLTDAIRGGQWKAGEALPAERQLCERLQISRVTLRQAVDVLVEQG
LVSRRQGAGTFVTTQIQHQLSGLTSFSETLRIKGYEPGTRWLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMA
YEHAVLPQRIVADPQQIGDSLYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
YCHNDFYDFVAELRR

Sequences:

>Translated_255_residues
MVKPKTNARTDDDPRMDALALDASAPTPLYLQLAAKLTDAIRGGQWKAGEALPAERQLCERLQISRVTLRQAVDVLVEQG
LVSRRQGAGTFVTTQIQHQLSGLTSFSETLRIKGYEPGTRWLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMA
YEHAVLPQRIVADPQQIGDSLYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
YCHNDFYDFVAELRR
>Mature_255_residues
MVKPKTNARTDDDPRMDALALDASAPTPLYLQLAAKLTDAIRGGQWKAGEALPAERQLCERLQISRVTLRQAVDVLVEQG
LVSRRQGAGTFVTTQIQHQLSGLTSFSETLRIKGYEPGTRWLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMA
YEHAVLPQRIVADPQQIGDSLYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
YCHNDFYDFVAELRR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=230, Percent_Identity=29.1304347826087, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786950, Length=226, Percent_Identity=29.646017699115, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790540, Length=229, Percent_Identity=31.0043668122271, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082252, Length=230, Percent_Identity=23.4782608695652, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=22.9437229437229, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28475; Mature: 28475

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKPKTNARTDDDPRMDALALDASAPTPLYLQLAAKLTDAIRGGQWKAGEALPAERQLCE
CCCCCCCCCCCCCCCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
RLQISRVTLRQAVDVLVEQGLVSRRQGAGTFVTTQIQHQLSGLTSFSETLRIKGYEPGTR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHH
WLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMAYEHAVLPQRIVADPQQIGDS
HHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHH
LYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH
YCHNDFYDFVAELRR
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MVKPKTNARTDDDPRMDALALDASAPTPLYLQLAAKLTDAIRGGQWKAGEALPAERQLCE
CCCCCCCCCCCCCCCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
RLQISRVTLRQAVDVLVEQGLVSRRQGAGTFVTTQIQHQLSGLTSFSETLRIKGYEPGTR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHH
WLERRLRPAHGEEILRLGLSPDAAVASLTRLRSADDRVMAYEHAVLPQRIVADPQQIGDS
HHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHH
LYSYLDAQGTPVVRALQYFRAINLPARLAEHLRMKTGEAILHVVRVGYARDGSAIELTDT
HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHH
YCHNDFYDFVAELRR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]