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The map label for this gene is ykgD [C]

Identifier: 21241352

GI number: 21241352

Start: 683619

End: 684542

Strand: Direct

Name: ykgD [C]

Synonym: XAC0581

Alternate gene names: 21241352

Gene position: 683619-684542 (Clockwise)

Preceding gene: 21241348

Following gene: 21241353

Centisome position: 13.21

GC content: 64.5

Gene sequence:

>924_bases
ATGGTTTCATCGCAATCGTCCAAGGATGACCCGCTTTCGCAGGTTCTGGCCGCGCTGGGCGCCAGGAGTGCCGGACTCAA
CCGGCTGGAAGCGCGTGGCGATTGGGCGCTGTCGTTACCGGAAAAGCATCGGCTCAAGCTGGTCGCGCTGATACGCGGTG
AATGCTGGATCCGCCTTCCGCGGCGGGCGCCCAAGCGCGTGGTCGAAGGCGACGTGCTGCTGATCGGCAATACGCCCTAC
GTCATTGCCAGCGATCCGCAACGCGCGCCGGTCGATGGTGTCTCGCGTTATGCCGGGCAGCAGAGCCTGCGCCTGGGCGA
TGGCGACGACACCGTACTGCTTGGTGCGGGCATTGTCTTCAGCGGCGAGAACAGTGGCTTTCTGATCGATGCGCTGCCGC
GGCTCATGAAGATCCAGAGTGTCTCGCCATCCGCCTTCGCCGTGCGCACGACACTGGATCTGCTCGATGCGGAAATGGGC
CGGCATCGGATGGGCAGCGCTCGGGTCGCGTCGTGTCTTTCCGAAGTGCTGGTGGTGGAGGCCATTCGCGCCTACATGCA
CGCGCATACACAGGCGCACACAAGCTGGATTGGTGCACTGGGCGATCGCCACATCGGTGCGGCACTCGCGCTGATGCACG
GCGATGTCGCACATGCGTGGACAGTGGCCGAACTGGCATCGCGCGTGGGCATGTCGCGCTCGGCGTTTTCGTCGCGCTTT
TCGCAGAAGGTCGGGCAGGCGCCGCTGCACTACCTGACGCAGTGGCGCATGCTGTTGGCGCACAGGTTGCTTGCCGAAAC
CGGTCTGGATATCGCCCGCGTTGCCGAGCGTGTCGGTTACCAGTCGCCGAGCGCGTTCGGCCATGCGTTCAAGCGCATGT
TCGGGGCGGCACCCAAGCGTTTGGTGAGACCGAGCGAGACATAG

Upstream 100 bases:

>100_bases
GATGACCACGACCTTGTTTTCGATCGTCATCTGCGTGCTCCGTGATGGACGTGCCACCCACGGTAGCGCTGCCGGTTGGA
TGAATTATGCTTGCGCGGCC

Downstream 100 bases:

>100_bases
CGCAGCGGTAAACGACGTCGCCCGGCTGAAGCGTTTGCGAGTGCACTGAAGTCCGTCTCTGGCGCCCATGTGATCCATCG
CTGGCCCGGCGCATGCCGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MVSSQSSKDDPLSQVLAALGARSAGLNRLEARGDWALSLPEKHRLKLVALIRGECWIRLPRRAPKRVVEGDVLLIGNTPY
VIASDPQRAPVDGVSRYAGQQSLRLGDGDDTVLLGAGIVFSGENSGFLIDALPRLMKIQSVSPSAFAVRTTLDLLDAEMG
RHRMGSARVASCLSEVLVVEAIRAYMHAHTQAHTSWIGALGDRHIGAALALMHGDVAHAWTVAELASRVGMSRSAFSSRF
SQKVGQAPLHYLTQWRMLLAHRLLAETGLDIARVAERVGYQSPSAFGHAFKRMFGAAPKRLVRPSET

Sequences:

>Translated_307_residues
MVSSQSSKDDPLSQVLAALGARSAGLNRLEARGDWALSLPEKHRLKLVALIRGECWIRLPRRAPKRVVEGDVLLIGNTPY
VIASDPQRAPVDGVSRYAGQQSLRLGDGDDTVLLGAGIVFSGENSGFLIDALPRLMKIQSVSPSAFAVRTTLDLLDAEMG
RHRMGSARVASCLSEVLVVEAIRAYMHAHTQAHTSWIGALGDRHIGAALALMHGDVAHAWTVAELASRVGMSRSAFSSRF
SQKVGQAPLHYLTQWRMLLAHRLLAETGLDIARVAERVGYQSPSAFGHAFKRMFGAAPKRLVRPSET
>Mature_307_residues
MVSSQSSKDDPLSQVLAALGARSAGLNRLEARGDWALSLPEKHRLKLVALIRGECWIRLPRRAPKRVVEGDVLLIGNTPY
VIASDPQRAPVDGVSRYAGQQSLRLGDGDDTVLLGAGIVFSGENSGFLIDALPRLMKIQSVSPSAFAVRTTLDLLDAEMG
RHRMGSARVASCLSEVLVVEAIRAYMHAHTQAHTSWIGALGDRHIGAALALMHGDVAHAWTVAELASRVGMSRSAFSSRF
SQKVGQAPLHYLTQWRMLLAHRLLAETGLDIARVAERVGYQSPSAFGHAFKRMFGAAPKRLVRPSET

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33270; Mature: 33270

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSSQSSKDDPLSQVLAALGARSAGLNRLEARGDWALSLPEKHRLKLVALIRGECWIRLP
CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCEEECCCHHHHEEEEEEECCCCEEECC
RRAPKRVVEGDVLLIGNTPYVIASDPQRAPVDGVSRYAGQQSLRLGDGDDTVLLGAGIVF
CCCCHHHHCCCEEEECCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECEEEE
SGENSGFLIDALPRLMKIQSVSPSAFAVRTTLDLLDAEMGRHRMGSARVASCLSEVLVVE
ECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AIRAYMHAHTQAHTSWIGALGDRHIGAALALMHGDVAHAWTVAELASRVGMSRSAFSSRF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
SQKVGQAPLHYLTQWRMLLAHRLLAETGLDIARVAERVGYQSPSAFGHAFKRMFGAAPKR
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
LVRPSET
HCCCCCC
>Mature Secondary Structure
MVSSQSSKDDPLSQVLAALGARSAGLNRLEARGDWALSLPEKHRLKLVALIRGECWIRLP
CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCEEECCCHHHHEEEEEEECCCCEEECC
RRAPKRVVEGDVLLIGNTPYVIASDPQRAPVDGVSRYAGQQSLRLGDGDDTVLLGAGIVF
CCCCHHHHCCCEEEECCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECEEEE
SGENSGFLIDALPRLMKIQSVSPSAFAVRTTLDLLDAEMGRHRMGSARVASCLSEVLVVE
ECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AIRAYMHAHTQAHTSWIGALGDRHIGAALALMHGDVAHAWTVAELASRVGMSRSAFSSRF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
SQKVGQAPLHYLTQWRMLLAHRLLAETGLDIARVAERVGYQSPSAFGHAFKRMFGAAPKR
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
LVRPSET
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]