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The map label for this gene is virS [H]

Identifier: 21241307

GI number: 21241307

Start: 626028

End: 627038

Strand: Direct

Name: virS [H]

Synonym: XAC0536

Alternate gene names: 21241307

Gene position: 626028-627038 (Clockwise)

Preceding gene: 21241300

Following gene: 21241308

Centisome position: 12.1

GC content: 66.96

Gene sequence:

>1011_bases
ATGGCACGCAACCTCACGTTTTCATTGGACATCGGCTGGCGCACGCTGCTGAAGGACTTCGGCCTGAAGCCCGAGCACGT
GCTGCGCAAGGCCGGGCTGCCCGAAGATCTGTTCGCGCGCGTCGGCCGCGGGCTCGATACGGACGAGTATTTCCGCTTCT
GGCGGGCGCTGGAACTGGAAGCGGGCGATGCCATGTTTCCCTTGCACTTGCTCGAGATGGTGTCGGCCGAGGTGTTCGAT
CCGCCCTTGTTCGCCGCCCTGTGCAGCGCCAACCTGATGCAGGCGGTGCAGCGCCTGGCCAAGTACAAGCAACTCGTGGC
GCCCATGGGCCTGGAGGTGGACGTGGACCGTGCGGGAGCACTGACGGTGTCGCCACGCTGGTTGTCGGTGCAGACCGAAG
TGCCTTACTCGCTGCAGGTCGCAGAGGTCGCGTTCTTCCTGCGGCTGGCCCGGCTGGCGACGCGCGAGCCGGTGCAGGCG
CTGCGCGTGGTACTGCCGCGGCTTCCGCCCGGCGCCTATGCGCGGCGCTACGAGCGCTTCTTCGGCGTCCCCGTTCGACA
CGGCGAGGCTCCGGCCATCACCTTCGGCGCCGCCGACGCGCTGCGTCCGTTCCTGACCGTGAACGAAGGCATGTGGCGCG
TGTTCGAACCCGATCTGCGCCGCCGGCTCAGCGAACTTGATGCGGCGGCGACGACGGTGGAGCGCGTGCGTGCGGTGCTG
CTGGAGTTGCTGCCCAGCAACATGGCCACCATCGAAAAGGCCGCCGAACGCCTGGGGCTCAGCAAGCGCACGTTGCAGCG
CCGCCTCGAAGACGAAGGGGCGAATTTTCGCGCCTTGGTCAATGCGACCCGGGAGAGCCTTGCCCGCCATTACCTCGGCA
GCACCACGATGACCGGCGGGGAGATCGCGTTCCTGTTGGGGTTCGAAGACCCCAACTCGTTCTATCGCGCCTTCTTGGAA
TGGACGGGCCAGACGCCGGATACCGCGCGCAACGCCATGCGCCTGAACTGA

Upstream 100 bases:

>100_bases
TCACTTTGGCGTGTATTGCATGTCCCGCGCTTCGGTTCGGCGCTACGCTAGTTCCGTCCTCGTCCCAGCCTGGTCACCAT
CGACTCCCGGTCGCTTTCGC

Downstream 100 bases:

>100_bases
GAAGCGACAGGGTCCTGGTCTCATGAGGCTCCGTTGCATGCGCTGAGCCGATCAGGCGCCGGACGCCTTGAGAGGGGTGC
ATCGAGCGCTGCCCTGTGCG

Product: virulence regulating protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MARNLTFSLDIGWRTLLKDFGLKPEHVLRKAGLPEDLFARVGRGLDTDEYFRFWRALELEAGDAMFPLHLLEMVSAEVFD
PPLFAALCSANLMQAVQRLAKYKQLVAPMGLEVDVDRAGALTVSPRWLSVQTEVPYSLQVAEVAFFLRLARLATREPVQA
LRVVLPRLPPGAYARRYERFFGVPVRHGEAPAITFGAADALRPFLTVNEGMWRVFEPDLRRRLSELDAAATTVERVRAVL
LELLPSNMATIEKAAERLGLSKRTLQRRLEDEGANFRALVNATRESLARHYLGSTTMTGGEIAFLLGFEDPNSFYRAFLE
WTGQTPDTARNAMRLN

Sequences:

>Translated_336_residues
MARNLTFSLDIGWRTLLKDFGLKPEHVLRKAGLPEDLFARVGRGLDTDEYFRFWRALELEAGDAMFPLHLLEMVSAEVFD
PPLFAALCSANLMQAVQRLAKYKQLVAPMGLEVDVDRAGALTVSPRWLSVQTEVPYSLQVAEVAFFLRLARLATREPVQA
LRVVLPRLPPGAYARRYERFFGVPVRHGEAPAITFGAADALRPFLTVNEGMWRVFEPDLRRRLSELDAAATTVERVRAVL
LELLPSNMATIEKAAERLGLSKRTLQRRLEDEGANFRALVNATRESLARHYLGSTTMTGGEIAFLLGFEDPNSFYRAFLE
WTGQTPDTARNAMRLN
>Mature_335_residues
ARNLTFSLDIGWRTLLKDFGLKPEHVLRKAGLPEDLFARVGRGLDTDEYFRFWRALELEAGDAMFPLHLLEMVSAEVFDP
PLFAALCSANLMQAVQRLAKYKQLVAPMGLEVDVDRAGALTVSPRWLSVQTEVPYSLQVAEVAFFLRLARLATREPVQAL
RVVLPRLPPGAYARRYERFFGVPVRHGEAPAITFGAADALRPFLTVNEGMWRVFEPDLRRRLSELDAAATTVERVRAVLL
ELLPSNMATIEKAAERLGLSKRTLQRRLEDEGANFRALVNATRESLARHYLGSTTMTGGEIAFLLGFEDPNSFYRAFLEW
TGQTPDTARNAMRLN

Specific function: Probably activates the ArgJ gene that encodes ornithine acetyltransferase. Binds to its own promoter-operator region. Probably binds ornithine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37837; Mature: 37706

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARNLTFSLDIGWRTLLKDFGLKPEHVLRKAGLPEDLFARVGRGLDTDEYFRFWRALELE
CCCCEEEEEECCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCC
AGDAMFPLHLLEMVSAEVFDPPLFAALCSANLMQAVQRLAKYKQLVAPMGLEVDVDRAGA
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCE
LTVSPRWLSVQTEVPYSLQVAEVAFFLRLARLATREPVQALRVVLPRLPPGAYARRYERF
EEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
FGVPVRHGEAPAITFGAADALRPFLTVNEGMWRVFEPDLRRRLSELDAAATTVERVRAVL
HCCCCCCCCCCEEEECCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LELLPSNMATIEKAAERLGLSKRTLQRRLEDEGANFRALVNATRESLARHYLGSTTMTGG
HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
EIAFLLGFEDPNSFYRAFLEWTGQTPDTARNAMRLN
CEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHCCCC
>Mature Secondary Structure 
ARNLTFSLDIGWRTLLKDFGLKPEHVLRKAGLPEDLFARVGRGLDTDEYFRFWRALELE
CCCEEEEEECCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCC
AGDAMFPLHLLEMVSAEVFDPPLFAALCSANLMQAVQRLAKYKQLVAPMGLEVDVDRAGA
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCE
LTVSPRWLSVQTEVPYSLQVAEVAFFLRLARLATREPVQALRVVLPRLPPGAYARRYERF
EEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
FGVPVRHGEAPAITFGAADALRPFLTVNEGMWRVFEPDLRRRLSELDAAATTVERVRAVL
HCCCCCCCCCCEEEECCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LELLPSNMATIEKAAERLGLSKRTLQRRLEDEGANFRALVNATRESLARHYLGSTTMTGG
HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
EIAFLLGFEDPNSFYRAFLEWTGQTPDTARNAMRLN
CEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9401045; 10984043 [H]