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The map label for this gene is ynbD [H]

Identifier: 21241287

GI number: 21241287

Start: 607237

End: 608574

Strand: Direct

Name: ynbD [H]

Synonym: XAC0516

Alternate gene names: 21241287

Gene position: 607237-608574 (Clockwise)

Preceding gene: 21241286

Following gene: 21241288

Centisome position: 11.73

GC content: 66.89

Gene sequence:

>1338_bases
ATGAGCCGCGCTGCGCGGCCAGTCGGTCGTGCCGCGCTGTGGCTGGCGTTGCTGGGGCCGTTTTTCTTCCTCAGTTACGG
CCTGGCCAACACGCTGGCCGGGCGGGCGACGCAGGTGCCGTCGGTGGTATTCGGCTGGGAACACGGCATGCCGTTCTGGC
CGTGGACCATCGTGCCGTACTGGTCGATCGATGCGTGCTACGCGGTCTCGTTTTTTGTCTGCCGCAATCGCCGCGAGCTG
GACACCCATGCACTGCGCTTGCTCAGCGCACAGCTGATCTGCGTGGCGTGTTTTTTGCTGTGGCCGCTGCGCTACAGCTT
CGTGCGGCCCGAGACCGGGGGCGTGTTCGGCTGGCTGTTCGCGGTGCTGCTGGGTTTTGACAAACCCTTCAATCAGGCGC
CATCGCTGCACATCGTGCTGTTGGTTGTGCTGTGGGTGCGCTATGCGCAGCATCTTTGCGGGGTGTGGCGCTGGCTGCTG
CATGCCTGGTTCGCATTGATCGGTGTGTCGGTGCTGACCACGTATCAGCATCACTTTCTGGATATTCCCACCGGGCTCGC
GGTGGGCTGGCTATGCGTGTGGATGTGGCCGGAGCGTATCGCTGCACCGTTCGCGCGGGCACGGTTTGCACGCGACCTGC
GTCGTTGGCGCTTGGCCGTGATGTATCTGGCCGGCGCGCTGGTCAGCGCTGCGCTGGCGCTATGGAGCGGAGGTGCAGGA
CTGTGGTTGCTGTGGATCGCCTTGGCTTTGCTGCTGGTTGCGTTGAATTACGCGCTGCTCGGGCCGGGCGGATTCCAGAA
GCGCAGCGATGGGCGCCTGAGTCTTGCCGCGCGCTGGTTGTATGCACCGTATCTGATGGCAGCATGGTGCAACTCGCGCC
TCTGGACGCGGCGCGCCCCGTCGCCGCGCGCGGTATGCGATGGCGTGTGGCTGGGGCGGATTCCGCTGCCCGGCCAGCGC
GACGAGCGTGCTGCGGTGGTGGACGTGTCTGCAGAGCTCTCGTTGTACGCCGCGCAGGCGCAGGACCGTGTGGTGCCGAT
GCTCGATCTGGTCGCACCGTCGCCAGCGCAACTACGCGAGGCGGCGCAGGCGATCGCGCAGGCGCGTGCGCACGGCCCGG
TGCTGGTGTGTTGCGCATTGGGCTATTCGCGCAGTGCTGCCAGCATGGCCACCTGGCTGGTGCGCAGCGGCCGCGCCCGG
GACGTGGATGCGGCCATCGCACAGCTACGCGCCGTGCGGCCGTCGATCGTGCTTGGGCACGCGCATCGCGCGGCGATCGT
GGCGGCATGCGACGGTCATGACGGTGGCGACGACATCCCCGAACGGAGAGCGCAATGA

Upstream 100 bases:

>100_bases
AGATGGATGGCCTGGTGGAAGCGGCGGGCTTTCGCAAGGTGGCGCAACGCATCGATGCGTTCGGCATCTTCACCGTGTCG
ATGGCGCAGCGGGTCGACGC

Downstream 100 bases:

>100_bases
ATACCTCCCCGCTGACCTTGCCGGCCATGCGCGCAGTGCTGCGGCAAGGTGCAGCACTGGACCGCTTCTCACTCCTGTTG
CTGGCGGCGGCCATTGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MSRAARPVGRAALWLALLGPFFFLSYGLANTLAGRATQVPSVVFGWEHGMPFWPWTIVPYWSIDACYAVSFFVCRNRREL
DTHALRLLSAQLICVACFLLWPLRYSFVRPETGGVFGWLFAVLLGFDKPFNQAPSLHIVLLVVLWVRYAQHLCGVWRWLL
HAWFALIGVSVLTTYQHHFLDIPTGLAVGWLCVWMWPERIAAPFARARFARDLRRWRLAVMYLAGALVSAALALWSGGAG
LWLLWIALALLLVALNYALLGPGGFQKRSDGRLSLAARWLYAPYLMAAWCNSRLWTRRAPSPRAVCDGVWLGRIPLPGQR
DERAAVVDVSAELSLYAAQAQDRVVPMLDLVAPSPAQLREAAQAIAQARAHGPVLVCCALGYSRSAASMATWLVRSGRAR
DVDAAIAQLRAVRPSIVLGHAHRAAIVAACDGHDGGDDIPERRAQ

Sequences:

>Translated_445_residues
MSRAARPVGRAALWLALLGPFFFLSYGLANTLAGRATQVPSVVFGWEHGMPFWPWTIVPYWSIDACYAVSFFVCRNRREL
DTHALRLLSAQLICVACFLLWPLRYSFVRPETGGVFGWLFAVLLGFDKPFNQAPSLHIVLLVVLWVRYAQHLCGVWRWLL
HAWFALIGVSVLTTYQHHFLDIPTGLAVGWLCVWMWPERIAAPFARARFARDLRRWRLAVMYLAGALVSAALALWSGGAG
LWLLWIALALLLVALNYALLGPGGFQKRSDGRLSLAARWLYAPYLMAAWCNSRLWTRRAPSPRAVCDGVWLGRIPLPGQR
DERAAVVDVSAELSLYAAQAQDRVVPMLDLVAPSPAQLREAAQAIAQARAHGPVLVCCALGYSRSAASMATWLVRSGRAR
DVDAAIAQLRAVRPSIVLGHAHRAAIVAACDGHDGGDDIPERRAQ
>Mature_444_residues
SRAARPVGRAALWLALLGPFFFLSYGLANTLAGRATQVPSVVFGWEHGMPFWPWTIVPYWSIDACYAVSFFVCRNRRELD
THALRLLSAQLICVACFLLWPLRYSFVRPETGGVFGWLFAVLLGFDKPFNQAPSLHIVLLVVLWVRYAQHLCGVWRWLLH
AWFALIGVSVLTTYQHHFLDIPTGLAVGWLCVWMWPERIAAPFARARFARDLRRWRLAVMYLAGALVSAALALWSGGAGL
WLLWIALALLLVALNYALLGPGGFQKRSDGRLSLAARWLYAPYLMAAWCNSRLWTRRAPSPRAVCDGVWLGRIPLPGQRD
ERAAVVDVSAELSLYAAQAQDRVVPMLDLVAPSPAQLREAAQAIAQARAHGPVLVCCALGYSRSAASMATWLVRSGRARD
VDAAIAQLRAVRPSIVLGHAHRAAIVAACDGHDGGDDIPERRAQ

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=420, Percent_Identity=41.9047619047619, Blast_Score=278, Evalue=6e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 49278; Mature: 49147

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAARPVGRAALWLALLGPFFFLSYGLANTLAGRATQVPSVVFGWEHGMPFWPWTIVPY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEECCCCCCCCCCEECCC
WSIDACYAVSFFVCRNRRELDTHALRLLSAQLICVACFLLWPLRYSFVRPETGGVFGWLF
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AVLLGFDKPFNQAPSLHIVLLVVLWVRYAQHLCGVWRWLLHAWFALIGVSVLTTYQHHFL
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIPTGLAVGWLCVWMWPERIAAPFARARFARDLRRWRLAVMYLAGALVSAALALWSGGAG
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LWLLWIALALLLVALNYALLGPGGFQKRSDGRLSLAARWLYAPYLMAAWCNSRLWTRRAP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SPRAVCDGVWLGRIPLPGQRDERAAVVDVSAELSLYAAQAQDRVVPMLDLVAPSPAQLRE
CCCHHHCCCEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHCCCCHHHHHH
AAQAIAQARAHGPVLVCCALGYSRSAASMATWLVRSGRARDVDAAIAQLRAVRPSIVLGH
HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHEEEC
AHRAAIVAACDGHDGGDDIPERRAQ
CCCEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRAARPVGRAALWLALLGPFFFLSYGLANTLAGRATQVPSVVFGWEHGMPFWPWTIVPY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEECCCCCCCCCCEECCC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CCCEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]