| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is ycdF [H]
Identifier: 21241206
GI number: 21241206
Start: 515296
End: 516054
Strand: Reverse
Name: ycdF [H]
Synonym: XAC0433
Alternate gene names: 21241206
Gene position: 516054-515296 (Counterclockwise)
Preceding gene: 21241209
Following gene: 21241197
Centisome position: 9.97
GC content: 65.48
Gene sequence:
>759_bases ATGTCGAACACCGCACTCCGTCCGCAACGCGTATTGATTGCTGGCGGCAGCCGTGGCATCGGCCTGGCGATCGCCGAGGC GTTCGTGCGTCATGGCGCGCAGGTTTCGATCTGCGCGCGCAATGCCGCCGGTCTTGCACAGGCTGCAGACGCACTGGCAG CGCAGGGCGCCCCGGTGCATACACTGCCTTGCGACCTGGCAGACGCCACGCAGATCGATGCCTACGTGCACGCCGCAGCA CAAGCGCTGGATGGGCTGGACGTGGTCATCAACAACGCTTCCGGCTTCGGCCATGGCAACGACGATGCAAGCTGGCAGGC CGGCCTGGAGATCGACCTGATGGCCGCAGTGCGCTGCAACCGCGCCGCGCTGCCGTATCTGCGTCGCAGCGATGCCGCGG TGATCCTCAACATCAGCTCGATCAACGCACAACGCCCTACCCCGCGCGCGATCGCCTATTCCACCGCCAAGGCCGCGCTC AACTACTACACCACCACCCTGGCTGCAGAGTTGGCGCGCGAGCGCATCCGCGTCAATGCAATCGCGCCTGGATCGATCGA GTTTCCCGATGGGCTCTGGGACACGCGCAGCCGCGAGCAGCCGGAGCTATACGCACGCATCCGCGACAGCATCCCGTTCG GTGGCTTCGGACAGGTGCAGCATGTTGCCGACGCGGCGTTGTTTCTGGCATCGCCACAGGCAAGTTGGATCACCGGGCAA GTGTTGGCCGTGGATGGCGGGCAGTCGTTGGGGGTGTAA
Upstream 100 bases:
>100_bases GTGCAGCGCGATCGTCGTCCGTGCCGCGCTGGCGATACGCGTGGCAACCCCGAAGCGCGCGGCTATCGGATAATGCGGCT TTCCAAACCGAGCAGCCGCC
Downstream 100 bases:
>100_bases GCACGATCTGCTGGCGGAGATACCGATCGGCTGTACGCGGATTCGTGGGAGCGTGCCTGCGCGCGACCAAGCGTCATCGG TAATCCCTCGTCGCGCGCAG
Product: 3-oxoacyl-[ACP] reductase
Products: NA
Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSNTALRPQRVLIAGGSRGIGLAIAEAFVRHGAQVSICARNAAGLAQAADALAAQGAPVHTLPCDLADATQIDAYVHAAA QALDGLDVVINNASGFGHGNDDASWQAGLEIDLMAAVRCNRAALPYLRRSDAAVILNISSINAQRPTPRAIAYSTAKAAL NYYTTTLAAELARERIRVNAIAPGSIEFPDGLWDTRSREQPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQ VLAVDGGQSLGV
Sequences:
>Translated_252_residues MSNTALRPQRVLIAGGSRGIGLAIAEAFVRHGAQVSICARNAAGLAQAADALAAQGAPVHTLPCDLADATQIDAYVHAAA QALDGLDVVINNASGFGHGNDDASWQAGLEIDLMAAVRCNRAALPYLRRSDAAVILNISSINAQRPTPRAIAYSTAKAAL NYYTTTLAAELARERIRVNAIAPGSIEFPDGLWDTRSREQPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQ VLAVDGGQSLGV >Mature_251_residues SNTALRPQRVLIAGGSRGIGLAIAEAFVRHGAQVSICARNAAGLAQAADALAAQGAPVHTLPCDLADATQIDAYVHAAAQ ALDGLDVVINNASGFGHGNDDASWQAGLEIDLMAAVRCNRAALPYLRRSDAAVILNISSINAQRPTPRAIAYSTAKAALN YYTTTLAAELARERIRVNAIAPGSIEFPDGLWDTRSREQPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQV LAVDGGQSLGV
Specific function: 7-Alpha-Dehydroxylation Of Cholic Acid, Yielding Deoxycholic Acid And Lithocholic Acid, Respectively. Highest Affinity With Taurochenodeoxycholic Acid. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=30.8641975308642, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=29.7520661157025, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=32.7935222672065, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=34.3220338983051, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI5031737, Length=257, Percent_Identity=29.5719844357977, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=29.5275590551181, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=29.1497975708502, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI31542939, Length=217, Percent_Identity=28.110599078341, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI4503301, Length=227, Percent_Identity=29.5154185022026, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=28.4, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI126723750, Length=246, Percent_Identity=25.2032520325203, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=34.7150259067358, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI66933014, Length=232, Percent_Identity=27.1551724137931, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI32455239, Length=189, Percent_Identity=26.4550264550265, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI5031765, Length=189, Percent_Identity=26.4550264550265, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI126723191, Length=175, Percent_Identity=29.7142857142857, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4504503, Length=182, Percent_Identity=30.2197802197802, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI224922801, Length=162, Percent_Identity=28.3950617283951, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=28.125, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=26.0700389105058, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=31.8548387096774, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=31.1475409836066, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=29.4117647058824, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=30.5220883534137, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=27.843137254902, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=30.1587301587302, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=31.2252964426877, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=26.0700389105058, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=28.7449392712551, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=25.6916996047431, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1787545, Length=267, Percent_Identity=26.9662921348315, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=29.6, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787891, Length=256, Percent_Identity=26.5625, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=32.046332046332, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=33.59375, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=33.8461538461538, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=29.3650793650794, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=32.319391634981, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=30.2325581395349, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=29.5719844357977, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=31.3492063492063, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562906, Length=256, Percent_Identity=30.46875, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=31.5384615384615, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=29.2307692307692, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=30.9803921568627, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=28.1853281853282, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17561402, Length=244, Percent_Identity=29.5081967213115, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=27.6923076923077, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560220, Length=256, Percent_Identity=28.90625, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=29.1187739463602, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=28.1853281853282, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17551412, Length=259, Percent_Identity=27.7992277992278, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=28.957528957529, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17544670, Length=274, Percent_Identity=28.4671532846715, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=30.859375, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538486, Length=257, Percent_Identity=31.1284046692607, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI25147288, Length=257, Percent_Identity=27.2373540856031, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17561272, Length=240, Percent_Identity=27.5, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=26.6666666666667, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=27.0588235294118, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17555706, Length=260, Percent_Identity=25.7692307692308, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=26.7206477732794, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=28.6458333333333, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=26.984126984127, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=257, Percent_Identity=25.2918287937743, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=33.9920948616601, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=30.46875, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=28.1632653061224, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=30.241935483871, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI24643142, Length=258, Percent_Identity=31.3953488372093, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21357673, Length=226, Percent_Identity=31.4159292035398, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24644337, Length=233, Percent_Identity=28.3261802575107, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI21358495, Length=185, Percent_Identity=30.8108108108108, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=29.7029702970297, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=25.78125, Blast_Score=71, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 26352; Mature: 26221
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNTALRPQRVLIAGGSRGIGLAIAEAFVRHGAQVSICARNAAGLAQAADALAAQGAPVH CCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCE TLPCDLADATQIDAYVHAAAQALDGLDVVINNASGFGHGNDDASWQAGLEIDLMAAVRCN ECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEECCCEEEEEEHHHCC RAALPYLRRSDAAVILNISSINAQRPTPRAIAYSTAKAALNYYTTTLAAELARERIRVNA CHHCCHHCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEE IAPGSIEFPDGLWDTRSREQPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQ ECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCEEEEE VLAVDGGQSLGV EEEEECCCCCCC >Mature Secondary Structure SNTALRPQRVLIAGGSRGIGLAIAEAFVRHGAQVSICARNAAGLAQAADALAAQGAPVH CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCE TLPCDLADATQIDAYVHAAAQALDGLDVVINNASGFGHGNDDASWQAGLEIDLMAAVRCN ECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEECCCEEEEEEHHHCC RAALPYLRRSDAAVILNISSINAQRPTPRAIAYSTAKAALNYYTTTLAAELARERIRVNA CHHCCHHCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEE IAPGSIEFPDGLWDTRSREQPELYARIRDSIPFGGFGQVQHVADAALFLASPQASWITGQ ECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCEEEEE VLAVDGGQSLGV EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377; 9298659 [H]