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The map label for this gene is hrcU [H]

Identifier: 21241179

GI number: 21241179

Start: 477460

End: 478533

Strand: Reverse

Name: hrcU [H]

Synonym: XAC0406

Alternate gene names: 21241179

Gene position: 478533-477460 (Counterclockwise)

Preceding gene: 21241189

Following gene: 21241178

Centisome position: 9.25

GC content: 60.24

Gene sequence:

>1074_bases
ATGTCGGAAGAAAAAACCGAGAAGCCGACCGAGAAGAAACTGCGGGATGCGCGCAGGGACGGGGAAGTTCCGGTCAGCCC
GGACGTCACTGCAGCCGCGGTGCTCTTTGGCGCGCTAATGGTCATGAAATCGGCCGGCGACTACTTCTCCGACCACATGC
GCGCATTGATGACGATCGGCTTCGATTTCCCGGAAAATACACGCGATGCAACGGCAATAAACCGCGCACTGGGCCATATC
GGCATCCAGGGATTGGTGTTGATGCTCCCCTTGCTGGTTGCTTGCCTGGTGGCTGGCGTGGCAGGCGGTGCTTTCCAGAC
TGGGCTGAATGCCTCCCTCAAGCCGGTGGCGCCCAAGTTCGATTCCCTCAATCCCGCAACCGGGGTCAAGAAACTCTTTT
CGTTGCGAAGCCTCATCAATCTACTGAAGTTGATCATCAAGGCCATCTTGATTGGCGTGGTGCTGTGGGCCGGTATCCGC
ATCCTCATGCCGATGATCATTGGCCTTGCCTACCAGACACCACCCGACATTGCCCAGATTGCCTGGCGGACGCTGGGGAT
GCTATTCGCATTGGGCGTGCTGCTGTTCGTACTGGTCGGCGCCGCAGACTGGAGCGTGCAGCACTGGCTGTTCATCCGCG
ACAAACGAATGAGCAAGGACGAGCAGAAGCGCGAAGTCAAGGAGAGCGAGGGCGACCCGGAAATCAAGGGCAAGCGCAAG
GAATTCGCCAATCAGATGGTGTTTGGCGACCCGCGCGAACGCGTCGCCAAGGCCAAGGTGATGGTGGTCAACCCGACCCA
TTACGCGGTGGCACTGGCCTACGAGCCCGATGACTTCGGCCTACCGCAGGTCGTGGCCAAGGGCGTGGACGACGGCGCGC
TGGAGCTGCGCGCCTTCGCGCATAACCAGGGCATTCCGATCGTTGCCAATCCGCCACTGGCACGTGCGCTGTATCAGGTT
GAATTGGGCGACGCAGTGCCCGAACCACTGTTCGAAACGGTTGCAGTGGTGTTGCGCTGGGTCGATGAACTCGGTCGCGA
CCACAGCGACGGCGATGGAGCTCTGCCATGCTAG

Upstream 100 bases:

>100_bases
TCCGGCTTCGCCAGGCTACCCACACATTCGCCTGTCAAGCGGATCGTTCCACCACAGCTCACCACAATCGGGGGCGCAGC
GATCGCGGAAGGAGAGGGCA

Downstream 100 bases:

>100_bases
GAGATCGCGTGCGAGCGACAAGGTATTTCGCTTACAGCGGCGAAGTCGCCATCGCCGCCTTGGTGGTGGCGGTCATCGGG
CTGATGATCCTGCCGCTGCC

Product: type III secretion system protein HrcU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGFDFPENTRDATAINRALGHI
GIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPKFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIR
ILMPMIIGLAYQTPPDIAQIAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKRK
EFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAFAHNQGIPIVANPPLARALYQV
ELGDAVPEPLFETVAVVLRWVDELGRDHSDGDGALPC

Sequences:

>Translated_357_residues
MSEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGFDFPENTRDATAINRALGHI
GIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPKFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIR
ILMPMIIGLAYQTPPDIAQIAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKRK
EFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAFAHNQGIPIVANPPLARALYQV
ELGDAVPEPLFETVAVVLRWVDELGRDHSDGDGALPC
>Mature_356_residues
SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIGFDFPENTRDATAINRALGHIG
IQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPKFDSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRI
LMPMIIGLAYQTPPDIAQIAWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKRKE
FANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAFAHNQGIPIVANPPLARALYQVE
LGDAVPEPLFETVAVVLRWVDELGRDHSDGDGALPC

Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=347, Percent_Identity=32.2766570605187, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 38881; Mature: 38750

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIG
CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
FDFPENTRDATAINRALGHIGIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPKF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCC
DSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKRK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEHHHCCCHHHHHHHHHCCCCCCCCCHHH
EFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAFA
HHHHHCCCCCHHHHHHHCEEEEECCCCEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHH
HNQGIPIVANPPLARALYQVELGDAVPEPLFETVAVVLRWVDELGRDHSDGDGALPC
CCCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SEEKTEKPTEKKLRDARRDGEVPVSPDVTAAAVLFGALMVMKSAGDYFSDHMRALMTIG
CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
FDFPENTRDATAINRALGHIGIQGLVLMLPLLVACLVAGVAGGAFQTGLNASLKPVAPKF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCC
DSLNPATGVKKLFSLRSLINLLKLIIKAILIGVVLWAGIRILMPMIIGLAYQTPPDIAQI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AWRTLGMLFALGVLLFVLVGAADWSVQHWLFIRDKRMSKDEQKREVKESEGDPEIKGKRK
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEHHHCCCHHHHHHHHHCCCCCCCCCHHH
EFANQMVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGLPQVVAKGVDDGALELRAFA
HHHHHCCCCCHHHHHHHCEEEEECCCCEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHH
HNQGIPIVANPPLARALYQVELGDAVPEPLFETVAVVLRWVDELGRDHSDGDGALPC
CCCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8316211; 11823852 [H]