Click here to switch to the map view.

The map label for this gene is yesY [H]

Identifier: 21240945

GI number: 21240945

Start: 210124

End: 211215

Strand: Direct

Name: yesY [H]

Synonym: XAC0171

Alternate gene names: 21240945

Gene position: 210124-211215 (Clockwise)

Preceding gene: 21240944

Following gene: 21240946

Centisome position: 4.06

GC content: 67.22

Gene sequence:

>1092_bases
TTGCTCTGCACCGGCATCGCCCATGCCGCGCCACAGCGCATCTTCATCGCCGGAGATTCCACCGCCGCCGAATACGGTGC
CGAGCGCGCCCCGCAGGCCGGTTGGGGCCAACTGCTGCAGGACTGGTTCGACCCGGCGCAGTGGCAGGTGCACAACCACG
CCAAAGGCGGGCGCAGCACGCGCAGTTTCATCGCCGAAGGGCGCCTGGATGCCATCGCAAGAGAATTGCAACGCGGCGAT
GTGTTGCTGATCCAGTTCGGCCACAACGATGCCAAGCGCGAAGACCCCACGCGCTACACCGATCCGACGACCGACTACAT
GCAGTTCCTGCGCCGCTACATCGCCGCTGCGCGCGACAAGGGCGCCACACCCATCCTGATCACTCCGGCCGCGCGCCTGC
TCTACGACTTCGGCGCGCTGCTCGACACCCATGGCCGCTACACCCTGGCCATGCAGCAACTTGCCGCGCAGGAACACGTG
GGCCTGATCGATCTCAACGCCAGTTCCAGCGACTGGATTCGCGCGCTCGGCGAGCGGGCGGCCAGACCGTATTTCCTGTT
CGTGCCCGAACAGGGCAAGGCCGACGGCACCCACTTCAGCCGCGCCGGCGCGACCGCCATCGCCTGCCTGGTGGTGCAGG
GTTGGGTCCAGCTGCAGCCGGCGCTCGAGTCGCAGCTGCAGCGCGATGCCGATTGCGGTGCTGCGCCCGACACCGCCACG
CAACGTGCTGCACAACCGCGTCCGTCGTTGATCGCACACGAACGCGATCTCGCGCGTCGGCAGCCTGGCCCGCACGGCGG
CGCCGGCCCGACCACGGCCTATCCGTTTTTCGCAGACGCGCCGGATCTGGCGTTCGTGCTGCGCAAGCGGGTGCTGCACA
AAGGTGCCGGCATCGGCCTGCATCTGCACGACAAGGACGAGATCTATTACATCGTCAGCGGGCGCGGCTTGTACGCGCTG
GACGGCAAGCAATACCAGGTCGCTGCCGGCGATGCGTTGTTGACGCGGCCGGGCAGTACGCACGCCTTGCAGCAGACTGG
TGAAGAGCCGCTGGTGCTGCTATTGGCCTATCTCGCCAAGCCGGCAGGCTGA

Upstream 100 bases:

>100_bases
ACGCGTCAGCACCGTATCGCAAACCGCAACAACACCAGCAACAGCAACAGCGCGCTCACTCAGCGGAGCCCCCATGCATC
GACTGCTCATCGCCATGCTG

Downstream 100 bases:

>100_bases
GCCTTCGCCCCGGTGCACCGCATCTGCCGGCACTGCACCTGCGCCGCCCATCGCTGTACTGCGGTGTCAGTCGGTCCAGG
CCGGCAGCCATCGCCGCGTA

Product: rhamnogalacturonan acetylesterase

Products: NA

Alternate protein names: RGAE [H]

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MLCTGIAHAAPQRIFIAGDSTAAEYGAERAPQAGWGQLLQDWFDPAQWQVHNHAKGGRSTRSFIAEGRLDAIARELQRGD
VLLIQFGHNDAKREDPTRYTDPTTDYMQFLRRYIAAARDKGATPILITPAARLLYDFGALLDTHGRYTLAMQQLAAQEHV
GLIDLNASSSDWIRALGERAARPYFLFVPEQGKADGTHFSRAGATAIACLVVQGWVQLQPALESQLQRDADCGAAPDTAT
QRAAQPRPSLIAHERDLARRQPGPHGGAGPTTAYPFFADAPDLAFVLRKRVLHKGAGIGLHLHDKDEIYYIVSGRGLYAL
DGKQYQVAAGDALLTRPGSTHALQQTGEEPLVLLLAYLAKPAG

Sequences:

>Translated_363_residues
MLCTGIAHAAPQRIFIAGDSTAAEYGAERAPQAGWGQLLQDWFDPAQWQVHNHAKGGRSTRSFIAEGRLDAIARELQRGD
VLLIQFGHNDAKREDPTRYTDPTTDYMQFLRRYIAAARDKGATPILITPAARLLYDFGALLDTHGRYTLAMQQLAAQEHV
GLIDLNASSSDWIRALGERAARPYFLFVPEQGKADGTHFSRAGATAIACLVVQGWVQLQPALESQLQRDADCGAAPDTAT
QRAAQPRPSLIAHERDLARRQPGPHGGAGPTTAYPFFADAPDLAFVLRKRVLHKGAGIGLHLHDKDEIYYIVSGRGLYAL
DGKQYQVAAGDALLTRPGSTHALQQTGEEPLVLLLAYLAKPAG
>Mature_363_residues
MLCTGIAHAAPQRIFIAGDSTAAEYGAERAPQAGWGQLLQDWFDPAQWQVHNHAKGGRSTRSFIAEGRLDAIARELQRGD
VLLIQFGHNDAKREDPTRYTDPTTDYMQFLRRYIAAARDKGATPILITPAARLLYDFGALLDTHGRYTLAMQQLAAQEHV
GLIDLNASSSDWIRALGERAARPYFLFVPEQGKADGTHFSRAGATAIACLVVQGWVQLQPALESQLQRDADCGAAPDTAT
QRAAQPRPSLIAHERDLARRQPGPHGGAGPTTAYPFFADAPDLAFVLRKRVLHKGAGIGLHLHDKDEIYYIVSGRGLYAL
DGKQYQVAAGDALLTRPGSTHALQQTGEEPLVLLLAYLAKPAG

Specific function: May play role in the degradation of rhamnogalacturonan derived from plant cell walls. Probably has broad substrate specificity and may degrade several types of acetylated substrates [H]

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'GDSL' lipolytic enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 39488; Mature: 39488

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCTGIAHAAPQRIFIAGDSTAAEYGAERAPQAGWGQLLQDWFDPAQWQVHNHAKGGRST
CCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHH
RSFIAEGRLDAIARELQRGDVLLIQFGHNDAKREDPTRYTDPTTDYMQFLRRYIAAARDK
HHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
GATPILITPAARLLYDFGALLDTHGRYTLAMQQLAAQEHVGLIDLNASSSDWIRALGERA
CCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHH
ARPYFLFVPEQGKADGTHFSRAGATAIACLVVQGWVQLQPALESQLQRDADCGAAPDTAT
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHH
QRAAQPRPSLIAHERDLARRQPGPHGGAGPTTAYPFFADAPDLAFVLRKRVLHKGAGIGL
HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
HLHDKDEIYYIVSGRGLYALDGKQYQVAAGDALLTRPGSTHALQQTGEEPLVLLLAYLAK
EEECCCCEEEEEECCEEEEECCCEEEEECCCEEEECCCCCHHHHHCCCCHHHHHHHHHHC
PAG
CCC
>Mature Secondary Structure
MLCTGIAHAAPQRIFIAGDSTAAEYGAERAPQAGWGQLLQDWFDPAQWQVHNHAKGGRST
CCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHH
RSFIAEGRLDAIARELQRGDVLLIQFGHNDAKREDPTRYTDPTTDYMQFLRRYIAAARDK
HHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
GATPILITPAARLLYDFGALLDTHGRYTLAMQQLAAQEHVGLIDLNASSSDWIRALGERA
CCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHH
ARPYFLFVPEQGKADGTHFSRAGATAIACLVVQGWVQLQPALESQLQRDADCGAAPDTAT
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHH
QRAAQPRPSLIAHERDLARRQPGPHGGAGPTTAYPFFADAPDLAFVLRKRVLHKGAGIGL
HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
HLHDKDEIYYIVSGRGLYALDGKQYQVAAGDALLTRPGSTHALQQTGEEPLVLLLAYLAK
EEECCCCEEEEEECCEEEEECCCEEEEECCCEEEECCCCCHHHHHCCCCHHHHHHHHHHC
PAG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]