| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yagH [H]
Identifier: 21240939
GI number: 21240939
Start: 203483
End: 205009
Strand: Direct
Name: yagH [H]
Synonym: XAC0165
Alternate gene names: 21240939
Gene position: 203483-205009 (Clockwise)
Preceding gene: 21240938
Following gene: 21240940
Centisome position: 3.93
GC content: 67.06
Gene sequence:
>1527_bases TTGTGCGCCGGCCTGAGCGCTGCGGCGGACTGGAAGCGCGGTATCGAACACCAGCGCATCGCCGACCAGGGCGATGGCCG CTTTCTCAATCCGGTGCTGGCCGGCGACCATCCCGACCCGTCGGTGCTCAAGGATGGCGATGATTACTACCTCACGCTGT CCTCGTTCGATGCGTACCCGGGCCTGCCGATCTGGCACTCGCGCGATCTGGTCAACTGGCAGCCGCTGGGCCACGCCATC ACCCAGAACGTCGGTGCGATCTGGGCGCCTGACCTGATCAAGCACGGCAAGCGCTACTACATCTATTTCCCCGCGCGGCG CGGCGATCAGGGCGAGCGCAGCAATTTCGTGGTGTGGGCCGACGACATCACCGGTCCATGGAGCGCGCCGATCGATATCG GCCTGGGCAAATACATCGACCCCGGCCATGCGGTGGGCGAAGACGGCAAGCGTTACCTGTTCCTGAGCGGCGGCGATTAC GTGCAGCTGTCCGATGACGGCCTCAAGGTGGTCGGCACGCCCAGGCACGTCTACGACGGCTGGAAATACCCGGAAAGCTG GGACGTGGAAGGCTATGCCCAGGAGGGCCCCAAGATCACCCGCCACAACGGCTGGTACTACATGACGACCGCCGTGGGCG GCACCGCCGGCCCGCCGACCGGGCACATGGTGATCACCGCGCGCTCGCGCTCGATCCACGGCCCGTGGCAGAACGCGCCC AATAACCCGATCACCCGCACCAGCAGCGCGGATGAGCCGTGGTGGTCGCGTGGCCACGCCACCCTGGTGGAAGGCACCGA CGGCCGCTGGTGGATGCTCTACCACGGCTACGAACACGGCTACTGGACGCTGGGCCGGCAGGCCTTGCTCGACCCGATCG AATGGACTCCGGACGGTTGGTTCGCCGCCAAGGGCGGCGATCTGGGCACCCCGCTGAAGAAACCCAGCGGGCAGGCGCTG GCCCACGGGATGGCGTTGTCGGACGATTTCCGTGCGGCCAGACTGGGCCCGCAGTGGGCCTTCTTCGACCCGGCTGCCGA CGAAGCCAAGCGCCTGCAGGTGGGCAATGGCGTGTTGCGCCTGCAGGGCAAGGGCACCGCGCCGCGCAATGCCTCGCCGC TGACGGTGATCGCCACCGACCCGGCCTACCAGTTCGAAGTGCAGATGACCGTGGCGCCGGGCGGCCAGGGCGGGGCGTTG CTGTTCTACAGCGACAAGCTCTATGCCGGCGTCGGCAGCAATGGGCAACAGTTCGTCATGCACCGCTACGGCGAAGAACG CCCGGCCACGCTGTCGCCCAGCACCACCGGCGGCACGCTGTGGCTGCGCGTCACCAACAACCGCCACATCGTCACCATTC ACAGCAGTCCCGACGGCAAGACGTGGACCAAGTACCCGGTGCAGATGGAAGTGTCCGGTTACCACCACAACGTGGCCGGC AAGTTCCTGGCCCTGAAGCCGGCGCTCTATGCCGCAGGCCCCGGCCAGGTGGAATTCCGCAACTTCCGCTACCGCGCCCT TGACTGA
Upstream 100 bases:
>100_bases CCGCCATCGTGGTAAAGCCCGGCATCCGGGACTAGGAGAGAGCATGCGTGTGCGTCCCATTTCATCCCGGTGGCGTTGGC TGATGGCCGGCGGCTTGCTG
Downstream 100 bases:
>100_bases CTGACCGTTCTGCATCGGCGGGCATGTCGTGGCGCCGCCTGCTGTGGCAGGCCCGGCACGGCGGACCCGGTGCAGCGGCA GGCCTCGCTCAGGTCTGCCG
Product: arabinosidase
Products: NA
Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]
Number of amino acids: Translated: 508; Mature: 508
Protein sequence:
>508_residues MCAGLSAAADWKRGIEHQRIADQGDGRFLNPVLAGDHPDPSVLKDGDDYYLTLSSFDAYPGLPIWHSRDLVNWQPLGHAI TQNVGAIWAPDLIKHGKRYYIYFPARRGDQGERSNFVVWADDITGPWSAPIDIGLGKYIDPGHAVGEDGKRYLFLSGGDY VQLSDDGLKVVGTPRHVYDGWKYPESWDVEGYAQEGPKITRHNGWYYMTTAVGGTAGPPTGHMVITARSRSIHGPWQNAP NNPITRTSSADEPWWSRGHATLVEGTDGRWWMLYHGYEHGYWTLGRQALLDPIEWTPDGWFAAKGGDLGTPLKKPSGQAL AHGMALSDDFRAARLGPQWAFFDPAADEAKRLQVGNGVLRLQGKGTAPRNASPLTVIATDPAYQFEVQMTVAPGGQGGAL LFYSDKLYAGVGSNGQQFVMHRYGEERPATLSPSTTGGTLWLRVTNNRHIVTIHSSPDGKTWTKYPVQMEVSGYHHNVAG KFLALKPALYAAGPGQVEFRNFRYRALD
Sequences:
>Translated_508_residues MCAGLSAAADWKRGIEHQRIADQGDGRFLNPVLAGDHPDPSVLKDGDDYYLTLSSFDAYPGLPIWHSRDLVNWQPLGHAI TQNVGAIWAPDLIKHGKRYYIYFPARRGDQGERSNFVVWADDITGPWSAPIDIGLGKYIDPGHAVGEDGKRYLFLSGGDY VQLSDDGLKVVGTPRHVYDGWKYPESWDVEGYAQEGPKITRHNGWYYMTTAVGGTAGPPTGHMVITARSRSIHGPWQNAP NNPITRTSSADEPWWSRGHATLVEGTDGRWWMLYHGYEHGYWTLGRQALLDPIEWTPDGWFAAKGGDLGTPLKKPSGQAL AHGMALSDDFRAARLGPQWAFFDPAADEAKRLQVGNGVLRLQGKGTAPRNASPLTVIATDPAYQFEVQMTVAPGGQGGAL LFYSDKLYAGVGSNGQQFVMHRYGEERPATLSPSTTGGTLWLRVTNNRHIVTIHSSPDGKTWTKYPVQMEVSGYHHNVAG KFLALKPALYAAGPGQVEFRNFRYRALD >Mature_508_residues MCAGLSAAADWKRGIEHQRIADQGDGRFLNPVLAGDHPDPSVLKDGDDYYLTLSSFDAYPGLPIWHSRDLVNWQPLGHAI TQNVGAIWAPDLIKHGKRYYIYFPARRGDQGERSNFVVWADDITGPWSAPIDIGLGKYIDPGHAVGEDGKRYLFLSGGDY VQLSDDGLKVVGTPRHVYDGWKYPESWDVEGYAQEGPKITRHNGWYYMTTAVGGTAGPPTGHMVITARSRSIHGPWQNAP NNPITRTSSADEPWWSRGHATLVEGTDGRWWMLYHGYEHGYWTLGRQALLDPIEWTPDGWFAAKGGDLGTPLKKPSGQAL AHGMALSDDFRAARLGPQWAFFDPAADEAKRLQVGNGVLRLQGKGTAPRNASPLTVIATDPAYQFEVQMTVAPGGQGGAL LFYSDKLYAGVGSNGQQFVMHRYGEERPATLSPSTTGGTLWLRVTNNRHIVTIHSSPDGKTWTKYPVQMEVSGYHHNVAG KFLALKPALYAAGPGQVEFRNFRYRALD
Specific function: Unknown
COG id: COG3507
COG function: function code G; Beta-xylosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 43 family [H]
Homologues:
Organism=Escherichia coli, GI1786467, Length=493, Percent_Identity=28.6004056795132, Blast_Score=144, Evalue=1e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR009784 - InterPro: IPR006710 [H]
Pfam domain/function: PF07081 DUF1349; PF04616 Glyco_hydro_43 [H]
EC number: =3.2.1.37 [H]
Molecular weight: Translated: 56000; Mature: 56000
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCAGLSAAADWKRGIEHQRIADQGDGRFLNPVLAGDHPDPSVLKDGDDYYLTLSSFDAYP CCCCCCCHHHHHHCCCHHHHCCCCCCEEECCEECCCCCCCCCEECCCCEEEEEECCCCCC GLPIWHSRDLVNWQPLGHAITQNVGAIWAPDLIKHGKRYYIYFPARRGDQGERSNFVVWA CCCEECCCCCCCCCCCCHHHHHCCCCEECCHHHHCCCEEEEEEECCCCCCCCCCCEEEEE DDITGPWSAPIDIGLGKYIDPGHAVGEDGKRYLFLSGGDYVQLSDDGLKVVGTPRHVYDG CCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCEEEEECCHHHCCC WKYPESWDVEGYAQEGPKITRHNGWYYMTTAVGGTAGPPTGHMVITARSRSIHGPWQNAP CCCCCCCCCCCHHHCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCC NNPITRTSSADEPWWSRGHATLVEGTDGRWWMLYHGYEHGYWTLGRQALLDPIEWTPDGW CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEECCHHHHCCCCEECCCCE FAAKGGDLGTPLKKPSGQALAHGMALSDDFRAARLGPQWAFFDPAADEAKRLQVGNGVLR EEECCCCCCCCCCCCCCCHHHCCCEECCCCHHHHCCCCEEEECCCCCCHHEEEECCCEEE LQGKGTAPRNASPLTVIATDPAYQFEVQMTVAPGGQGGALLFYSDKLYAGVGSNGQQFVM EECCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCCCEEEEECCEEEEECCCCCCEEHH HRYGEERPATLSPSTTGGTLWLRVTNNRHIVTIHSSPDGKTWTKYPVQMEVSGYHHNVAG HHCCCCCCCEECCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEEECCCEECCCC KFLALKPALYAAGPGQVEFRNFRYRALD EEEEECCEEEECCCCCEEEEEEEEEECC >Mature Secondary Structure MCAGLSAAADWKRGIEHQRIADQGDGRFLNPVLAGDHPDPSVLKDGDDYYLTLSSFDAYP CCCCCCCHHHHHHCCCHHHHCCCCCCEEECCEECCCCCCCCCEECCCCEEEEEECCCCCC GLPIWHSRDLVNWQPLGHAITQNVGAIWAPDLIKHGKRYYIYFPARRGDQGERSNFVVWA CCCEECCCCCCCCCCCCHHHHHCCCCEECCHHHHCCCEEEEEEECCCCCCCCCCCEEEEE DDITGPWSAPIDIGLGKYIDPGHAVGEDGKRYLFLSGGDYVQLSDDGLKVVGTPRHVYDG CCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCEEEEECCHHHCCC WKYPESWDVEGYAQEGPKITRHNGWYYMTTAVGGTAGPPTGHMVITARSRSIHGPWQNAP CCCCCCCCCCCHHHCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCC NNPITRTSSADEPWWSRGHATLVEGTDGRWWMLYHGYEHGYWTLGRQALLDPIEWTPDGW CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEECCHHHHCCCCEECCCCE FAAKGGDLGTPLKKPSGQALAHGMALSDDFRAARLGPQWAFFDPAADEAKRLQVGNGVLR EEECCCCCCCCCCCCCCCHHHCCCEECCCCHHHHCCCCEEEECCCCCCHHEEEECCCEEE LQGKGTAPRNASPLTVIATDPAYQFEVQMTVAPGGQGGALLFYSDKLYAGVGSNGQQFVM EECCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCCCEEEEECCEEEEECCCCCCEEHH HRYGEERPATLSPSTTGGTLWLRVTNNRHIVTIHSSPDGKTWTKYPVQMEVSGYHHNVAG HHCCCCCCCEECCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEEECCCEECCCC KFLALKPALYAAGPGQVEFRNFRYRALD EEEEECCEEEECCCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]