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The map label for this gene is xynB [H]

Identifier: 21240934

GI number: 21240934

Start: 198360

End: 199391

Strand: Reverse

Name: xynB [H]

Synonym: XAC0160

Alternate gene names: 21240934

Gene position: 199391-198360 (Counterclockwise)

Preceding gene: 21240947

Following gene: 21240933

Centisome position: 3.85

GC content: 69.86

Gene sequence:

>1032_bases
TTGACCGCACTTTCGCGCGCCACGCGGCATGGCCTGGCGGTCCTTGTGCTGGGCGCGCTGCTGGCCGGCCCGGCGCCGGC
GGCCGAGCGACCGAGCGCCGATACTGCCGCCGAACAAGCCAGCCGGATCGCGCTATGGCCAACGCCGCTGGCACCGGGGG
ATACGGCGCTGCCGCAACCGCAGCGCATCGTCGAGCGCAGCAGCGAGCCGACGCAGCCGGATCGCTACATCCAGCAGGTC
AGTACGCCGTATCTGGTGGTCTACCGGCCCAAACAGCCCAACGGCACCGCCCTGCTGGTCACGCCTGGCGGCGGCTACCA
ACGCATCGTGCTGGACAACGAGGGCAGCGCGCTGGTGCCCGGCTTTGTCGACGTCGCCGGCATCACCCTGTTCGTGCTGC
GCTACCGGCTGCCGGGCGAAGGCCACCCGAACGGCGCCGACGTGCCGCTGGCCGATGCGCAACGTGCCTTGCGGCTGATC
CGCGCCAATGCGGCGCGCTATGGCATCGATGCGCAGCGCGTGGGCGTGATGGGCTTTTCGGCCGGCGGCCATGTCGCCGC
CAGCCTGGGCACGCGCTACGCCGCGCAGGTGTATCCGCCCATCGACGCGGCCGATGCACTGAGCGCACGACCGGACTTCC
AGTTGCTGATCTACCCGGTGATCGACATGGACAGCGCCAACGCGCACAAAGGCTCACGCGAACGCCTGCTCGGCAGCGCC
CCGAGCCAGGCGCAGGTGCAGGCCTATTCGCCACAGCTGCACGTGGACGCGCGCACGCCACCTACCTTTCTGCTGCATGC
GCAGGACGACAGCGTGGTGCCGGTGCGCAACAGCCTGCTGATGCACGATGCGCTGCTACGCGCCGGTGTGCCCAGCGAGC
TGCATGTATTCCCGCAGGGCGGCCATGGCTTCGGTACCGCCAGCGGCAGCGGTCTTACCGTGTCCGCATGGCCGCAGCTG
GCGCAAGCCTGGATCGCGCATGTCGCCAAGCCCGCACCGACACCTACACCCGCGAAGGAGATGGCGCGATGA

Upstream 100 bases:

>100_bases
TAAACCGGTGTCATTGGCAATGTGCACTGCGGCAATTGTGGTCGCGGTGACGAAGTGGCCCTGGGAGGGGTGAATGCAAC
AGACACGCCAAACGCATGCG

Downstream 100 bases:

>100_bases
CAACCCAAGCCACTCCTGACACGCGACGCCGCACGCTGCTGCGTGGTGGCCTGCTCGCGACTGCGGCAGCAACGCTTCCC
GGCTTCGCTGCCGCGGCCGT

Product: xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTALSRATRHGLAVLVLGALLAGPAPAAERPSADTAAEQASRIALWPTPLAPGDTALPQPQRIVERSSEPTQPDRYIQQV
STPYLVVYRPKQPNGTALLVTPGGGYQRIVLDNEGSALVPGFVDVAGITLFVLRYRLPGEGHPNGADVPLADAQRALRLI
RANAARYGIDAQRVGVMGFSAGGHVAASLGTRYAAQVYPPIDAADALSARPDFQLLIYPVIDMDSANAHKGSRERLLGSA
PSQAQVQAYSPQLHVDARTPPTFLLHAQDDSVVPVRNSLLMHDALLRAGVPSELHVFPQGGHGFGTASGSGLTVSAWPQL
AQAWIAHVAKPAPTPTPAKEMAR

Sequences:

>Translated_343_residues
MTALSRATRHGLAVLVLGALLAGPAPAAERPSADTAAEQASRIALWPTPLAPGDTALPQPQRIVERSSEPTQPDRYIQQV
STPYLVVYRPKQPNGTALLVTPGGGYQRIVLDNEGSALVPGFVDVAGITLFVLRYRLPGEGHPNGADVPLADAQRALRLI
RANAARYGIDAQRVGVMGFSAGGHVAASLGTRYAAQVYPPIDAADALSARPDFQLLIYPVIDMDSANAHKGSRERLLGSA
PSQAQVQAYSPQLHVDARTPPTFLLHAQDDSVVPVRNSLLMHDALLRAGVPSELHVFPQGGHGFGTASGSGLTVSAWPQL
AQAWIAHVAKPAPTPTPAKEMAR
>Mature_342_residues
TALSRATRHGLAVLVLGALLAGPAPAAERPSADTAAEQASRIALWPTPLAPGDTALPQPQRIVERSSEPTQPDRYIQQVS
TPYLVVYRPKQPNGTALLVTPGGGYQRIVLDNEGSALVPGFVDVAGITLFVLRYRLPGEGHPNGADVPLADAQRALRLIR
ANAARYGIDAQRVGVMGFSAGGHVAASLGTRYAAQVYPPIDAADALSARPDFQLLIYPVIDMDSANAHKGSRERLLGSAP
SQAQVQAYSPQLHVDARTPPTFLLHAQDDSVVPVRNSLLMHDALLRAGVPSELHVFPQGGHGFGTASGSGLTVSAWPQLA
QAWIAHVAKPAPTPTPAKEMAR

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17552908, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 36160; Mature: 36028

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALSRATRHGLAVLVLGALLAGPAPAAERPSADTAAEQASRIALWPTPLAPGDTALPQP
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCEEEEECCCCCCCCCCCCCH
QRIVERSSEPTQPDRYIQQVSTPYLVVYRPKQPNGTALLVTPGGGYQRIVLDNEGSALVP
HHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCEECC
GFVDVAGITLFVLRYRLPGEGHPNGADVPLADAQRALRLIRANAARYGIDAQRVGVMGFS
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEC
AGGHVAASLGTRYAAQVYPPIDAADALSARPDFQLLIYPVIDMDSANAHKGSRERLLGSA
CCCCCHHHHCCCEEEEECCCCCHHHHHCCCCCCEEEEEEEEECCCCCCCCCCHHHHHCCC
PSQAQVQAYSPQLHVDARTPPTFLLHAQDDSVVPVRNSLLMHDALLRAGVPSELHVFPQG
CCCCEEEEECCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
GHGFGTASGSGLTVSAWPQLAQAWIAHVAKPAPTPTPAKEMAR
CCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure 
TALSRATRHGLAVLVLGALLAGPAPAAERPSADTAAEQASRIALWPTPLAPGDTALPQP
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCEEEEECCCCCCCCCCCCCH
QRIVERSSEPTQPDRYIQQVSTPYLVVYRPKQPNGTALLVTPGGGYQRIVLDNEGSALVP
HHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCCEECC
GFVDVAGITLFVLRYRLPGEGHPNGADVPLADAQRALRLIRANAARYGIDAQRVGVMGFS
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEC
AGGHVAASLGTRYAAQVYPPIDAADALSARPDFQLLIYPVIDMDSANAHKGSRERLLGSA
CCCCCHHHHCCCEEEEECCCCCHHHHHCCCCCCEEEEEEEEECCCCCCCCCCHHHHHCCC
PSQAQVQAYSPQLHVDARTPPTFLLHAQDDSVVPVRNSLLMHDALLRAGVPSELHVFPQG
CCCCEEEEECCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
GHGFGTASGSGLTVSAWPQLAQAWIAHVAKPAPTPTPAKEMAR
CCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]